Protein

View in Explore
Genbank accession
YP_010090591.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence Phold
Probability 1,00
Protein sequence
MSNTIEHISDEAKYVEFNPNGTSFPISITNVQAALAALNPVAVQGVQLATTAVAGSIRIATQTEVDAGVSNSTAVTPSTLKSAILKPPASYTGAGVIRIATQTEANAGAIDTAVIVPKTMAVAISNAINVRATESVFGTIKLSNEAAAKAGVDDTTAMTPLKTRMAIAAATSILPAWGAASETVQGVVYLATAAQTAAGTLRDGYAVSPYGLAKLVASETKRGLAQIANSAEIAAGTDTTKYVTPSSLLLRTGNTSRIGLVKLSNVVGTGDANTALSPLADIMHTRGGQSVAGTTTLQTLNVTNINYNGKQVATTDMIKDSVPVGAIYIWPSASLPSIDYLICDGRTLSRLDYPDLFTRIGYTYGGSGLSFKIPDMRGMFVRGTGTSQAILDARATDNKGKEGLGVGCSGGNLGEVQSQQVRYHKHDSGWGEYPSNRSQARNGISMTRGFQGAKKHDWDNYKYFTNDGYEVDSEGTRDSIGTMNSRNLIGKENRPWNISMNYIIKVK
Physico‐chemical
properties
protein length:507 AA
molecular weight: 53240,33570 Da
isoelectric point:8,91283
aromaticity:0,06114
hydropathy:-0,12998

Domains

Domains [InterPro]
SSF69349
244–330
SSF69349 IPR044916
IPR015173
251–308
IPR015173 IPR037053 IPR027448
SSF88874
317–506
SSF88874
IPR011083
325–381
IPR011083
YP_010090591.1
1 507
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PspYZU05
[NCBI] 		1983556 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010090591.1 [NCBI]
Genbank nucleotide accession
NC_055720.1 [NCBI]
CDS location
range 83486 -> 85009
strand +
CDS
ATGAGTAATACAATTGAGCATATTTCCGATGAAGCAAAATATGTTGAGTTTAATCCAAATGGGACCAGTTTTCCTATTTCAATTACAAACGTTCAAGCAGCATTAGCTGCTTTGAATCCAGTTGCAGTTCAAGGTGTCCAATTAGCTACTACTGCTGTTGCTGGTTCTATTCGTATTGCAACTCAGACCGAAGTAGATGCTGGTGTCTCTAATAGTACAGCTGTTACACCAAGCACATTAAAGAGTGCAATCCTTAAGCCTCCAGCGTCATATACTGGAGCAGGTGTTATTCGTATTGCAACTCAGACTGAAGCTAATGCCGGTGCTATTGACACAGCAGTTATAGTTCCAAAGACTATGGCAGTTGCAATCTCTAATGCTATTAACGTGCGTGCAACAGAAAGTGTATTCGGTACTATTAAGTTAAGTAACGAAGCTGCAGCTAAAGCGGGCGTAGATGATACCACTGCAATGACCCCACTTAAAACTCGTATGGCTATTGCTGCAGCTACTTCTATTTTGCCTGCATGGGGTGCTGCGAGCGAAACGGTCCAAGGTGTTGTATATCTAGCTACTGCAGCTCAAACTGCGGCAGGGACGTTAAGAGATGGCTATGCAGTTAGTCCTTATGGTCTTGCCAAATTAGTTGCATCAGAAACAAAACGTGGTTTAGCTCAAATTGCAAACTCTGCAGAAATTGCAGCTGGAACTGACACAACCAAATATGTTACACCAAGTTCTTTATTGCTTAGAACTGGCAATACTTCTCGAATTGGTTTAGTTAAATTAAGTAACGTTGTTGGTACTGGAGATGCTAATACTGCATTGAGTCCTTTAGCAGATATTATGCATACTCGTGGTGGTCAATCCGTTGCAGGCACAACAACACTTCAGACTTTAAACGTTACAAATATTAACTATAACGGTAAACAAGTTGCAACTACGGATATGATTAAAGATTCTGTTCCTGTAGGTGCGATCTATATCTGGCCTAGTGCTTCATTACCAAGTATAGATTATTTGATTTGTGATGGTCGCACTTTAAGTCGTCTTGATTACCCTGATTTATTCACCCGTATCGGATATACATATGGTGGAAGTGGACTTAGCTTTAAGATTCCGGATATGCGTGGCATGTTCGTTCGTGGTACAGGTACTTCTCAAGCAATCTTAGATGCCCGCGCAACAGACAATAAAGGTAAAGAAGGTTTAGGTGTAGGCTGTTCAGGCGGCAACTTAGGTGAAGTTCAAAGCCAACAAGTTCGTTACCATAAACATGATTCTGGTTGGGGTGAATATCCTAGTAACCGTAGTCAGGCACGAAATGGTATTTCTATGACTCGTGGATTCCAAGGTGCCAAAAAACATGATTGGGACAACTACAAATACTTTACAAACGATGGATACGAAGTCGATTCAGAAGGCACGCGAGATTCAATTGGTACTATGAATAGTCGCAACTTAATCGGAAAAGAAAACCGTCCATGGAACATTTCAATGAATTACATTATCAAAGTAAAATAG

Tertiary structure

PDB ID
4c06006745bbe9c65cc660e631509e30f6460d99882d7634b7923628c61882e5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7237
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of lytic bacteriophages infecting Pseudomonas strains for biocontrol of fish and shrimp spoilage during chilled storage Yang,Z., Tao,X., Gao,L. and Rao,S. 2022 — GenBank