Protein

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Genbank accession
XPP56807.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MGFGPAYGTGRGGGAVDIFTKKDGNPAIFANTGARDTYFTTNPDELAKVKSSGNAVAIGTTDQITAAYVYKNNAWQAIATNFKGDKGAPGAPGDGIDYSHLEDNQLPKWDSKAKMFVSSGILSQEDGEIRMAPNSLTFGHHKMSSAIADVTFTNLGTNENYSFVYQTMNPGDKDAYIREIDSNIEEIVRVPVGTDDVVNPSNTVTVDVDEIFLGGTFILSQDTQDVLMEVYNFDNPTQLIWRDNLGDMPSGENTVTFDTPFKCRAGFKYIIHLLSKAGDLVAKGSGSSFSWKINRAKMYIKKVASQDWVNEQPFIDDVTLTGNMFTFTMANGATKSVTLPPATGGVASPYDFTSFNSDKTPVLSEIANSTPVYHFNGLADSTFTLPSTDSLPPNKNIALLIRNASPNNSSLSVVSSGTDFIDRANIRTLNIPQGMLAMFISDYTRDLWHMVPLDSAGSGQNLNTNQIVKSIQPTASGTGLVTTYYDDTSITTTFDPWVSDINKLNDAVDTLQRQLKSKTRYYVYKGSNTPPPDIPTGARGGYYFTFTGTSADVVLPAPSRTAAIADGTILFVDNNSTSYKVTVTTTGSDTIAGTTKVDIPAESAAWYVRNGNNWQELYSGYLPESHKKLIDEIKTLISASNTFMRDVGVQGDDPNAGKVECTELEFHKCKVTQDTTVPTKGIVKFEGTTFVNPDGSKITTDVIKLVGMELVDPLDGTPPKLLLHGGGNLPTPHPTSAYGFFSPDADTPDSIDPNSLPVFRNGRVTLHKDTTDAQYAYVILPPGEGTDAERIGELGGLPSYWAKSDKIYNIGGVSRTYTVFRSPYPFREQDLTLVIYH
Physico‐chemical
properties
protein length:837 AA
molecular weight: 90816,21110 Da
isoelectric point:4,91114
aromaticity:0,09677
hydropathy:-0,32963

Domains

Domains [InterPro]
DC_1058
STR
25–825
DC_1058
Coil
Unmapped
501–521
Coil
XPP56807.1
1 837
Architecture
STR
STR 25-825 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPP56807.1
1 837
Domain Start End Length (AA) Confidence
N-terminal 1 736 736 0,8846
Central domain 737 826 91 0,3571
C-terminal 827 837 10 0,9286
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-736
Central
737-826
C-terminal
827-837

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Hades
[NCBI] 		3388591 Viruses >
Host Vibrio campbellii
[NCBI] 		680 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPP56807.1 [NCBI]
Genbank nucleotide accession
PQ768827.1 [NCBI]
CDS location
range 85782 -> 88295
strand +
CDS
ATGGGATTTGGCCCAGCCTATGGTACTGGTAGGGGCGGTGGAGCAGTAGACATCTTTACTAAAAAGGATGGGAACCCTGCCATTTTCGCCAATACTGGTGCTAGAGACACATACTTTACAACAAACCCTGATGAATTAGCTAAAGTAAAATCATCAGGTAATGCAGTAGCAATAGGTACTACTGATCAAATAACAGCTGCCTATGTATATAAAAATAATGCATGGCAAGCAATTGCAACCAACTTCAAGGGCGACAAAGGTGCTCCAGGTGCTCCAGGAGATGGGATTGATTACAGTCACCTAGAGGACAATCAATTACCTAAGTGGGATTCAAAAGCAAAAATGTTTGTTAGCTCAGGCATACTTTCCCAAGAAGATGGTGAAATAAGAATGGCACCTAACTCCTTGACCTTTGGGCACCACAAAATGTCCTCTGCTATAGCAGATGTTACCTTCACTAACCTAGGCACAAACGAAAACTACTCGTTTGTTTATCAGACAATGAACCCTGGCGATAAGGATGCTTACATACGTGAAATAGATAGCAATATAGAAGAGATCGTAAGGGTACCTGTGGGGACAGATGATGTTGTGAACCCATCAAATACAGTTACAGTAGATGTTGATGAAATATTCCTAGGCGGTACTTTTATACTATCACAAGATACACAAGATGTGTTAATGGAGGTATATAATTTTGATAATCCTACTCAACTTATTTGGAGAGATAACTTAGGTGATATGCCTTCAGGAGAAAACACAGTTACCTTCGATACACCATTTAAATGTAGAGCTGGTTTTAAGTATATTATCCACCTACTAAGTAAGGCAGGTGACTTAGTAGCAAAAGGTTCCGGTAGCTCTTTCAGTTGGAAGATCAACCGTGCGAAAATGTACATTAAAAAAGTTGCCTCTCAAGATTGGGTAAATGAGCAGCCGTTTATTGATGACGTTACTTTAACCGGTAACATGTTTACCTTTACTATGGCGAATGGGGCAACTAAATCTGTTACTTTACCTCCAGCTACAGGTGGGGTCGCATCACCTTACGACTTTACTAGCTTTAATTCTGATAAAACTCCTGTTCTATCAGAGATTGCGAATAGCACCCCAGTATACCACTTTAATGGTCTAGCAGATTCTACCTTTACATTACCATCTACGGACAGTTTACCACCAAATAAAAACATCGCCCTACTAATTAGAAATGCAAGCCCCAATAACTCTTCCCTAAGTGTAGTGTCTAGTGGGACTGATTTTATAGATAGAGCAAACATTCGTACACTAAATATACCGCAAGGTATGCTGGCCATGTTTATAAGTGATTATACTAGAGACCTATGGCACATGGTACCTCTTGATTCAGCTGGTAGTGGACAGAATCTAAATACTAATCAAATAGTTAAGAGTATACAGCCAACAGCAAGTGGTACTGGTCTAGTTACCACATACTACGACGACACAAGTATAACTACCACATTCGATCCTTGGGTTTCGGATATTAATAAACTTAACGACGCTGTAGATACGCTACAAAGACAACTTAAATCTAAGACTAGATACTATGTGTATAAGGGAAGTAACACTCCACCACCAGATATCCCAACTGGAGCTAGGGGAGGGTACTACTTTACCTTTACAGGTACTTCAGCTGATGTAGTATTACCGGCACCAAGCAGAACAGCGGCGATAGCTGATGGTACAATCCTGTTTGTTGATAATAACAGTACAAGCTATAAAGTAACCGTGACAACTACAGGCTCAGATACTATTGCAGGTACTACTAAGGTAGATATACCAGCTGAATCTGCAGCTTGGTATGTTCGCAACGGAAATAACTGGCAAGAATTGTACTCAGGTTACCTACCAGAATCGCATAAAAAGCTAATAGACGAGATAAAAACTCTAATATCAGCAAGTAATACCTTTATGAGAGATGTTGGTGTCCAAGGCGATGATCCTAACGCAGGTAAAGTAGAGTGTACAGAACTAGAGTTTCATAAGTGTAAGGTAACTCAAGATACCACAGTGCCTACTAAAGGTATTGTTAAGTTTGAAGGTACTACGTTTGTGAACCCGGACGGTTCAAAGATAACCACAGATGTTATTAAGTTGGTAGGTATGGAGTTGGTTGACCCACTAGACGGAACACCCCCTAAATTACTACTTCATGGTGGTGGTAATTTGCCTACTCCGCACCCAACAAGTGCGTATGGTTTCTTCAGTCCAGATGCTGATACACCAGATTCTATAGACCCTAACAGTCTTCCTGTGTTTAGGAACGGTAGGGTTACCCTACATAAAGATACTACTGATGCACAGTATGCATATGTTATATTACCGCCTGGTGAAGGTACTGATGCAGAGAGAATTGGTGAACTTGGTGGTTTACCATCTTACTGGGCTAAGAGTGATAAAATCTATAATATTGGTGGTGTTTCTAGAACATATACTGTGTTCCGCTCTCCTTACCCATTCAGAGAACAGGACTTAACATTAGTAATATATCATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f5e1c00b5bae30c64bbeec7003da12344ad8e54f0367c457c3c374b7fe8d3112
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2965
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50