Protein

View in Explore
Genbank accession
QBQ72452.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MAGYSRQSVADIIANAVIKAAPVNAEYNAIRDAFAFSGGHKHDGSSTEGAYVPLIADTDALNKVVVDTANNRIGIFTEVSSAAVEQIRIQDGAIVPVTDNDIDLGTSSLKYKNIYVNGIASIGSITLSGGTIDNTVIGGTTPAAADFTTMDASGNATVGGTLGVTGNTTIGGTLGVTGVTTLGTANITSVDIGSGAMDGTTIGATTAAAGTFTNLTATGTTTLTTVDINGGAIDGTAIGATSASTGAFTTLSATGTSTLSTVDINAGNIDGTIIGASSAAAGSFTTVSTSGQATLATADINGGTIDGAVIGATTPAAITGTTVTATSFVGPVTGNITGNVTGNVTGNVTGDVTGNVTASSGTSTFNNVTVNGTLNMDAGTTATITNLTSPTNTNDAATKGYVDTSVANLVDSAPGTLDTLNELAAALGDDPNFSTTITNSIATKLPLAGGTMTGAIAMGTNKITGLGDPTAAQDAATQNYVTTNFLGLTGGTMTGAIDMGSAKITTTYTPTNAADLTTKTYVDGILGSATAAAASATAAATSETNAATSETNAANSATAAASSATSAAASYDSFDDRYLGAKASAPALDNDGDALVLGALYFNTTTDIMYVYGSSGWQAAGSSVNGTAERNTYTATSGQTTFSATYDPGYVDVYLNGVKLLANTDFTATSGTSIVLTTGAATGDIVDIVAYGTFVVADTYTKSQSDARYVEVAGDTMTGTLNGTSAVFSGNLTVDTNTLHVDSTNNRVGVGTTSPSRQLHLSGSTPIIRLTDTDTNAYGEISSSSSDGNLMFYADQGNTQANTTIRFYVDTSERMRIDSSGNVGIGTSSFANLLNLHQSDASSNSYLHVTHVDSGTGASNGLSIGLESNGIDAAFRNRESGSVKLYTGNSERMRIDSSGNLLVGTTVTPVNLLTATSGGGMGFDPTDNYLVVAREGTNSSKPVIRLNQTGVDGSIAEFRKDGTTVGSIDTHGGVIQFGQGNVNLAFENGADVIYPANDNGTNNNGDIDLGTSSARFKGLYLSGGVVENTTTVTYASSIALTYNNGSIQTVTLTGNVTFTNSLADGEAIVYRMHPQTLIFM
Physico‐chemical
properties
protein length:1080 AA
molecular weight: 108354,92610 Da
isoelectric point:4,19258
aromaticity:0,05648
hydropathy:0,00731

Domains

Domains [InterPro]
DC_2007
ATT
76–179
DC_2007 DC_2007 DC_1795 DC_1386
DC_2007
ATT
164–226
DC_2007 DC_2007 IPR051934
DC_2093
STR
434–811
DC_2093
QBQ72452.1
1 1080
Architecture
ATT
STR
ATT 76-299 | STR 339-940 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBQ72452.1
1 1080
Domain Start End Length (AA) Confidence
N-terminal 1 129 129 0,2839
Central domain 130 479 351 0,6591
C-terminal 480 1080 600 0,5380
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-129
Central
130-479
C-terminal
480-1080

Taxonomy

  Name Taxonomy ID Lineage
Phage Roseobacter phage CRP-1
[NCBI] 		2559280 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rhodobacteraceae bacterium
[NCBI] 		1904441 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Rhodobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBQ72452.1 [NCBI]
Genbank nucleotide accession
MK613343 [NCBI]
CDS location
range 33886 -> 37128
strand -
CDS
ATGGCAGGTTATAGCAGACAATCAGTAGCAGATATTATCGCTAATGCGGTTATCAAAGCTGCACCAGTAAACGCAGAATACAACGCTATTCGTGATGCGTTTGCTTTCTCAGGCGGTCACAAACACGATGGTAGCTCTACTGAAGGTGCTTACGTACCTTTGATTGCTGACACTGATGCATTAAACAAAGTTGTAGTAGATACAGCTAACAACCGCATAGGTATCTTTACTGAGGTATCTAGTGCTGCAGTAGAACAGATACGTATTCAAGACGGTGCTATTGTTCCTGTAACAGACAACGACATTGACCTTGGTACTTCATCACTAAAATATAAAAACATTTATGTAAACGGTATTGCAAGCATTGGCTCCATCACACTGTCAGGTGGTACAATAGACAATACTGTTATTGGTGGTACTACTCCTGCCGCTGCTGACTTTACTACAATGGATGCATCAGGTAATGCTACTGTCGGTGGTACTCTTGGTGTCACAGGTAACACAACAATAGGTGGCACACTAGGTGTAACAGGTGTAACTACACTAGGCACTGCTAACATTACCTCTGTAGACATTGGCTCTGGTGCAATGGATGGAACTACTATTGGTGCCACAACTGCTGCAGCAGGTACATTTACTAACCTGACTGCTACAGGTACAACTACTCTTACAACAGTAGATATTAACGGTGGTGCTATTGATGGCACTGCTATCGGTGCAACTAGTGCATCTACTGGTGCTTTTACTACTCTGTCTGCCACAGGTACATCTACACTAAGCACAGTAGACATTAACGCAGGTAATATAGATGGTACTATTATTGGTGCTAGCAGTGCTGCTGCTGGTAGTTTTACAACTGTATCGACATCTGGACAAGCTACCTTGGCGACTGCTGACATTAATGGTGGCACTATTGACGGTGCTGTTATTGGTGCAACAACTCCAGCAGCTATCACAGGCACGACAGTTACAGCAACTTCTTTTGTTGGGCCAGTCACAGGTAACATCACAGGAAACGTTACAGGCAATGTAACTGGTAATGTCACAGGTGATGTAACAGGTAACGTTACTGCTTCAAGTGGTACATCTACATTTAACAACGTTACTGTTAATGGTACGTTGAACATGGATGCAGGTACAACTGCTACCATTACTAACCTAACAAGTCCAACTAACACAAATGATGCTGCCACTAAGGGGTATGTAGATACCTCTGTAGCTAACCTTGTAGACTCAGCCCCAGGTACACTAGACACACTAAACGAACTAGCTGCTGCTCTAGGTGATGACCCTAACTTCTCAACTACTATTACTAACAGCATAGCAACCAAGCTACCACTAGCAGGTGGTACGATGACTGGTGCTATTGCTATGGGTACAAACAAGATTACTGGCTTGGGTGATCCTACTGCAGCACAGGATGCAGCTACACAAAACTATGTAACAACTAACTTCTTAGGCTTAACAGGTGGCACTATGACAGGTGCTATCGACATGGGTAGTGCTAAGATTACAACTACCTATACACCTACTAACGCTGCTGATTTGACTACTAAAACATATGTAGACGGTATTCTAGGTAGTGCTACAGCCGCTGCTGCTAGTGCAACTGCTGCTGCTACATCGGAGACTAATGCAGCAACAAGTGAAACTAATGCGGCTAACTCAGCCACTGCTGCTGCAAGTTCAGCAACCAGTGCTGCAGCATCATATGATTCATTTGATGATCGTTACTTAGGTGCTAAAGCTTCTGCTCCTGCCCTAGATAATGACGGTGATGCTCTTGTACTTGGTGCATTGTACTTCAATACTACTACAGACATTATGTATGTCTATGGTAGCTCTGGGTGGCAAGCTGCAGGTTCATCTGTAAACGGTACAGCAGAACGTAATACTTACACAGCCACATCTGGTCAGACAACATTCAGTGCTACTTATGATCCAGGCTATGTAGATGTATATTTGAATGGTGTTAAGTTACTAGCTAATACAGACTTCACTGCTACATCAGGTACATCTATTGTACTAACTACAGGCGCAGCTACAGGTGACATCGTTGATATTGTAGCTTATGGTACATTCGTTGTAGCTGATACTTATACTAAGTCACAGTCTGATGCTCGTTATGTTGAAGTAGCTGGCGATACTATGACTGGTACACTTAACGGTACATCAGCAGTATTCAGTGGCAATCTGACAGTAGATACAAACACACTACACGTTGATAGCACAAATAATCGTGTTGGGGTTGGGACAACTTCGCCTAGCAGACAGCTTCATCTTTCTGGTTCTACACCAATCATTAGGCTGACCGACACAGATACAAACGCATATGGGGAAATTAGTAGTTCATCTTCGGATGGGAACTTAATGTTCTATGCTGACCAAGGCAACACACAAGCAAATACAACAATACGGTTTTATGTTGATACTTCAGAACGCATGCGCATCGACAGTTCTGGTAATGTTGGGATCGGGACGAGTTCGTTCGCCAACCTTTTAAATCTCCACCAGTCGGATGCATCCTCAAACTCTTATCTTCATGTAACTCATGTTGATAGTGGAACTGGTGCATCAAATGGTTTGTCTATTGGGCTAGAAAGTAACGGTATAGACGCAGCATTTAGAAACCGTGAAAGCGGCAGTGTTAAACTGTATACTGGTAACTCAGAACGCATGCGCATCGACAGCAGCGGTAACTTGCTGGTGGGGACTACTGTTACACCTGTTAACTTGCTAACTGCAACAAGCGGCGGTGGCATGGGGTTTGATCCAACTGATAATTACTTGGTCGTTGCGAGAGAGGGAACTAACAGCTCAAAACCTGTTATTCGATTAAATCAAACAGGCGTTGATGGGTCTATTGCAGAGTTCCGCAAAGACGGCACCACTGTGGGGAGTATTGATACCCACGGCGGTGTTATTCAGTTTGGTCAGGGTAATGTAAACCTAGCATTCGAAAATGGTGCAGATGTAATCTATCCCGCAAACGATAATGGCACCAACAATAATGGAGATATAGATTTAGGTACGTCAAGTGCTCGCTTCAAAGGCCTCTACCTCTCTGGGGGCGTAGTAGAAAACACAACCACAGTTACATACGCATCATCTATTGCTCTTACCTACAACAATGGTTCTATCCAAACAGTCACACTTACAGGCAACGTCACATTTACTAACAGCTTGGCAGACGGTGAAGCCATTGTGTATCGGATGCATCCTCAAACTCTTATCTTCATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4f1e798988fbd9cd2d0671323d8a55636f9eca547a048d5a85e255162910ebe6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2882
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Diverse, abundant and novel viruses infecting the marine abundant Roseobacter RCA lineage Zhang,Z.F., Chen,F., Chu,X., Zhang,H., Luo,H.W., Zhai,Z.Q., Yang,M.Y. and Zhao,Y.L. 2019 — GenBank