Protein

View in Explore
Genbank accession
QDB70442.1 [GenBank]
Protein name
putative pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MGFNTNNPLGSSDERDFYDNSANLDKALNSEAENWTDRLGVERPTVDYVLKQAGFTPAGFDFKTGGTLRAIDRNKCVFNQADQTWYMWQGDLPKTVAANSTPNPLGDNGWKPEAVDTGGKLRSDLLNGSLVMRNGLFAQRDFVSVRDFGVKGDGITDDTQAIQLAINFASSISGELIFPPGNYNFQGINFDGIRYTKVKGLGRVVLKYTGPENNSAIDCSDPRDTSGVIFENIQLDLNNVKNVKGFDLFYFTNQSALIDCGVINVSDGSVGLYLDRSWFAHFERFTVVGNNRSKTGIGVFFNSQLEAINGIVFNNIRVHSLGRGIKLKTGQFSCYGNSFIGGNIEQCGIGLEIEDLGGKEFNQLKFSEMYFENHDIHIKINCISVSGYISFDNSYHDFHTGFMDTSGNKTRVLLEECKYLSIKNTNGDLIGARNVTSSNVPNQDIENVIFSRYEDYVPVKSLTSGTNKNQNQNVQFYPVIVDRIQIPASPTTQSYKIPNKQIGVTVPSGGAVGRIEVFTYYSYGKVPRHALSYAVHKTSDNKYGLMLLSGQEVSSFSLTRDENTGELNFMINSGDTSYLQVVWHLF
Physico‐chemical
properties
protein length:586 AA
molecular weight: 65003,78760 Da
isoelectric point:5,50346
aromaticity:0,11263
hydropathy:-0,34676

Domains

Domains [InterPro]
DC_1559
ATT
1–169
DC_1559
IPR040775
RBD
56–106
IPR040775 IPR012334
G3DSA:2.10.10.80
ATT
58–111
G3DSA:2.10.10.80 IPR011050
IPR024535
ENZ
142–351
IPR024535
QDB70442.1
1 586
Architecture
ATT
STR
ATT 1-169 | STR 170-488 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDB70442.1
1 586
Domain Start End Length (AA) Confidence
N-terminal 1 160 160 0,9922
Central domain 161 456 297 0,9710
C-terminal 457 586 129 0,9645
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-160
Central
161-456
C-terminal
457-586

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage CF8
[NCBI] 		2575324 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDB70442.1 [NCBI]
Genbank nucleotide accession
MK774614 [NCBI]
CDS location
range 31723 -> 33483
strand +
CDS
ATGGGATTTAATACCAATAACCCTTTGGGGTCTAGCGACGAGCGCGACTTCTACGATAACAGCGCCAATTTAGATAAAGCACTTAATTCGGAAGCTGAAAATTGGACAGATCGTTTAGGTGTAGAGAGGCCGACGGTTGATTACGTTCTGAAACAAGCTGGATTTACACCAGCGGGGTTTGACTTTAAAACAGGTGGAACATTACGCGCGATTGATCGTAATAAATGTGTCTTTAACCAAGCTGACCAAACCTGGTATATGTGGCAAGGGGATCTTCCCAAAACAGTTGCTGCAAACAGCACACCTAATCCATTAGGAGATAATGGGTGGAAACCGGAAGCTGTTGATACAGGTGGTAAATTAAGATCTGACCTTTTAAATGGTTCTCTCGTAATGAGGAACGGACTCTTTGCACAAAGAGATTTTGTTAGTGTTAGAGATTTTGGAGTTAAAGGCGACGGTATTACGGACGATACCCAAGCCATACAGTTGGCGATAAATTTTGCAAGTTCAATTTCAGGAGAGTTAATTTTCCCACCTGGAAATTATAATTTCCAGGGTATTAATTTTGATGGTATCCGTTATACCAAAGTTAAAGGTCTGGGTCGGGTCGTACTAAAGTACACGGGTCCTGAAAATAATTCGGCAATTGATTGTTCTGATCCTAGAGACACATCCGGAGTTATATTTGAAAACATCCAACTAGACCTTAATAATGTAAAAAATGTAAAAGGGTTCGATTTATTTTATTTTACAAATCAATCTGCTTTAATTGATTGTGGTGTAATCAATGTTTCTGATGGCAGTGTCGGGTTATATTTGGATAGATCCTGGTTTGCTCATTTTGAACGATTTACTGTTGTTGGCAATAATCGTTCCAAGACAGGGATCGGTGTTTTCTTTAATAGCCAATTAGAGGCTATTAACGGGATTGTTTTCAACAACATCCGAGTTCATTCCCTAGGGAGAGGTATAAAACTAAAAACAGGTCAATTTAGTTGTTACGGGAATAGTTTTATTGGCGGAAACATAGAACAATGCGGAATTGGGTTAGAGATAGAGGATCTTGGCGGAAAAGAATTTAACCAGTTGAAATTTTCTGAAATGTATTTCGAAAATCATGATATACATATTAAAATAAATTGCATTTCTGTTTCAGGATATATTTCGTTTGATAATTCTTACCATGATTTTCACACAGGGTTTATGGACACAAGTGGTAACAAAACCAGAGTACTTTTGGAAGAATGTAAATATCTCAGTATTAAAAATACTAATGGTGATCTGATTGGCGCTAGAAACGTTACTTCTAGTAATGTACCAAACCAGGATATAGAAAATGTTATATTTTCTAGGTATGAGGATTATGTTCCTGTAAAGTCATTAACCTCAGGTACAAATAAAAATCAAAACCAAAATGTACAATTTTATCCCGTAATTGTGGATAGAATACAAATACCAGCTTCTCCAACAACCCAAAGCTATAAAATACCCAATAAACAAATCGGGGTTACAGTCCCCTCGGGAGGCGCTGTTGGTCGAATCGAGGTCTTCACTTACTATAGCTACGGAAAGGTCCCAAGACACGCACTAAGCTACGCGGTCCATAAAACATCAGATAATAAATATGGATTAATGTTGTTGTCAGGACAAGAAGTTTCTTCATTCTCGCTAACAAGAGATGAAAATACCGGAGAATTAAATTTTATGATTAATTCTGGAGATACAAGCTATCTGCAAGTTGTTTGGCATCTATTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
15cb740f59bf31b28e7c558dbcda5e95ee3c3ad6f6573b8128d87955f2caf1c3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7395
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Aeromonas hydrophila bacteriophage CF8 Rai,S., Tyagi,A., Naveenkumar,B.T. and Singh,N.K. 2020-04-30 — GenBank