Protein

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Genbank accession
UYM28904.1 [GenBank]
Protein name
long tail fiber distal subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,86
Protein sequence
MATLKPIQFKRSKTAGSRPLPEQVLEGELALNLEDRMIFTKDDEGNIIDLGFAKGGRVDGDIVQVGNYTQTGDYTTSGDINAKTITASAGVVSNGDLKASTGVIRTRGGNSGNAHLWFEGEEVGLTNNYERGVMYALPQTATEGTINLRVMNGFDNSKAQSLFSFRGNGDFSAPRDLVSQRGRFSIEAVAPTINTTRIYTRDKPWRSNSDESYGWLDLVNYVPGENGALALNYVYKGRAMSGGTIWHQLVDERTGPEWALYTGSGPENKAFAVGSSAGKGLGNFTGSLHVGNPGYSAIGNNSITIGETNTGLRQTSAGNLDFLSANNMAFRFSAGEAINRSYNRLHIQHSDANGNAVNPPANNAQLQVNTSGDENNPGGNGLTLIGYYAGATGEYNHYFRGKGSASFDMHRGVNINQGGLNVYNGLTNVGQINLTGSMNTTNVPQGTYKWDDLNTVAADAKSYLRRFRSRNNSTIWHETVEGGIWRLSTGSTDAQEELQISTSGVFKVRGEVIALGNGGTSGTGNHFRAIYGNYGFFIRNDGSNTYFMLTNSGDQYGGWNTFRPFTISNGTGRVSMGNGVGISGGLTVSPGIESEYVKTYTGSIGHGSWASQNDNEAMIFQRITSASTSEYCPILKQKYIGGNRTWSIGTLINVGSFHIHMKDSAGNDRNFAFQPNGDFNGANTINASAISVGSARLSSIATPGGGQFDNDGNVYINKSGFAGWIDALFVKKNGDTMSSTLNINANGPGINMNCPTGGSTYVIGRRNGVNGFYVGMGGTGNDATFHSYLNNTTINLRASDIQFSRTVYGDGDANFNNVYIRSDIRLKRNFKKIENALDKVDKLDGLIYEKKNTRESTEYETTEAGIIAQTLRSVLPEAVSEHEGTLNVSASGTIALLVNAIKELKARVEELESK
Physico‐chemical
properties
protein length:914 AA
molecular weight: 98244,14390 Da
isoelectric point:6,43516
aromaticity:0,09190
hydropathy:-0,45602

Domains

Domains [InterPro]
DC_0538
STR
1–702
DC_0538 G3DSA:6.20.80.10 IPR030392
IPR048390
ATT
500–567
IPR048390 DC_0482
IPR048388
ATT
759–809
IPR048388 IPR030392 Coil
UYM28904.1
1 914
Architecture
STR
ATT
STR
RBD
STR
ATT
RBD
STR 1-499 | ATT 500-567 | STR 568-702 | RBD 703-746 | STR 747-758 | ATT 759-809 | RBD 810-914
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UYM28904.1
1 914
Domain Start End Length (AA) Confidence
N-terminal 1 75 75 0,7938
Central domain 76 282 208 0,3805
C-terminal 283 914 631 0,8376
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-75
Central
76-282
C-terminal
283-914

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage vB_SspM_LC53
[NCBI] 		2989509 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UYM28904.1 [NCBI]
Genbank nucleotide accession
OP617331 [NCBI]
CDS location
range 158839 -> 161583
strand +
CDS
ATGGCAACTTTAAAACCAATACAATTTAAAAGAAGTAAAACAGCTGGTTCAAGACCTTTGCCTGAACAAGTATTAGAAGGTGAATTAGCCCTGAACCTCGAAGATCGTATGATTTTCACTAAAGATGATGAAGGGAATATCATTGACCTTGGTTTTGCAAAAGGTGGTCGTGTAGACGGCGATATTGTTCAGGTTGGTAATTACACTCAAACCGGGGATTACACTACTTCCGGGGACATCAATGCTAAAACTATAACAGCTTCAGCGGGTGTAGTTTCTAATGGCGATTTAAAAGCTTCTACTGGGGTTATTAGGACTAGAGGTGGTAATAGTGGGAACGCTCATCTTTGGTTTGAAGGTGAAGAAGTAGGCCTAACTAATAATTATGAAAGAGGCGTCATGTACGCTTTACCACAAACCGCTACTGAAGGGACTATTAACCTTAGGGTTATGAATGGTTTTGATAATAGCAAAGCCCAATCTTTATTTAGCTTCCGTGGTAACGGTGATTTTTCAGCTCCAAGAGATTTAGTATCTCAACGTGGGCGTTTTTCTATCGAAGCTGTGGCCCCTACAATTAACACAACTCGTATTTACACAAGAGATAAACCTTGGCGGTCAAATAGCGATGAATCTTATGGGTGGTTAGATTTAGTTAATTATGTTCCTGGAGAAAACGGGGCACTAGCATTAAACTATGTCTATAAAGGTCGAGCCATGTCTGGCGGAACCATTTGGCATCAATTGGTTGATGAAAGAACCGGTCCTGAATGGGCTCTTTATACTGGTAGCGGTCCTGAAAATAAAGCTTTTGCAGTAGGGTCATCCGCAGGTAAAGGTCTCGGTAACTTCACAGGCAGTTTACATGTAGGTAATCCAGGATATTCTGCTATTGGCAATAACTCTATTACTATTGGCGAAACTAATACTGGTTTAAGACAAACTTCAGCAGGTAATTTAGATTTCTTATCGGCTAATAATATGGCTTTCAGATTTTCTGCAGGTGAAGCCATAAACCGTTCTTATAATCGATTACACATCCAGCATTCTGATGCTAATGGTAATGCTGTTAATCCACCAGCTAATAATGCTCAACTACAAGTAAATACTTCAGGTGATGAAAATAACCCAGGCGGAAATGGATTAACCTTAATAGGCTATTATGCTGGAGCCACTGGCGAATACAATCACTATTTCCGTGGTAAAGGTTCTGCATCTTTTGATATGCATCGTGGTGTAAACATTAACCAAGGTGGCCTTAATGTTTATAATGGGTTAACGAATGTAGGCCAAATTAATTTAACGGGTTCAATGAATACTACTAACGTTCCACAAGGGACTTATAAGTGGGATGATTTGAACACTGTAGCTGCTGACGCTAAATCTTATTTACGTAGATTCCGTTCAAGAAATAACTCAACGATTTGGCATGAAACAGTCGAAGGCGGAATTTGGCGTTTATCTACTGGTTCTACTGACGCCCAAGAAGAATTACAAATTAGTACTAGTGGTGTGTTTAAGGTCAGAGGGGAAGTAATTGCTCTTGGAAATGGTGGAACCTCTGGGACTGGAAACCATTTCCGTGCTATATATGGGAATTACGGATTCTTTATTCGTAATGATGGTTCCAACACTTATTTTATGTTGACTAATTCAGGAGACCAATACGGTGGATGGAATACTTTCCGTCCTTTTACTATCAGTAATGGTACTGGCCGAGTTTCAATGGGTAATGGTGTTGGTATTAGTGGTGGACTGACGGTTTCTCCAGGCATTGAATCGGAATATGTTAAAACTTATACAGGTAGTATAGGTCATGGCTCTTGGGCTTCACAGAATGATAATGAAGCAATGATTTTCCAAAGAATTACTAGTGCTTCTACTTCTGAATACTGTCCTATTCTTAAGCAAAAATATATTGGCGGAAATAGAACTTGGTCAATAGGTACTTTGATTAACGTAGGTTCTTTCCATATCCATATGAAAGATTCTGCTGGTAATGACAGAAACTTTGCTTTTCAACCTAACGGCGATTTTAATGGTGCTAATACCATTAATGCATCAGCTATATCTGTAGGCAGTGCTAGACTTAGTTCTATCGCTACTCCAGGTGGTGGTCAATTTGATAATGACGGTAACGTTTATATCAATAAATCTGGTTTTGCAGGCTGGATAGATGCACTATTTGTTAAGAAAAATGGTGATACCATGTCTAGCACTTTAAACATAAATGCGAACGGCCCGGGCATAAATATGAACTGTCCTACAGGTGGTTCTACTTATGTTATAGGTAGGAGAAACGGTGTTAACGGATTTTATGTTGGTATGGGTGGTACTGGTAACGATGCAACGTTCCATAGTTATTTGAACAACACTACTATTAACTTACGTGCTTCAGATATCCAGTTCAGCCGTACAGTTTATGGTGATGGTGATGCAAACTTCAACAACGTTTATATTCGTTCAGATATTCGTTTAAAACGCAACTTCAAGAAAATTGAAAATGCTTTAGATAAAGTTGATAAACTTGATGGTTTAATTTACGAGAAGAAAAATACTCGTGAATCTACTGAATATGAAACAACTGAAGCAGGTATCATTGCCCAGACTTTACGATCTGTATTACCTGAAGCCGTTTCAGAGCATGAAGGTACTCTTAATGTTTCAGCTTCTGGGACTATTGCTCTGTTAGTTAATGCTATCAAAGAACTTAAAGCTCGTGTTGAAGAACTTGAATCAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1d4635abe4394a847ae9156e7cd9b2a30aaa405656db40ab678635b24da67e8c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5561
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
An OmpW-dependent T4-like phage infects Serratia sp. ATCC 39006 Mahler,M., Malone,L.M., van den Berg,D.F., Smith,L.M., Brouns,S.J.J. and Fineran,P.C. — — GenBank