Protein

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Genbank accession
QBX26659.1 [GenBank]
Protein name
minor structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MNNLENLATEIGKDIKDIKTRYATKEELHEATEIDYSQIVTHEELDGKHYLTEHQSLEEYAKKSETPVFRFAKGDIPSGGVGATATITTADLMNPDSVKVGDIIEDYWSGATGANRGIWKVTAVNGTNVSVQGIGARFLPTPYNDTELKQRISTLESRPSSGSGGLGTEEIATYSNTVIYIPNGNIVYNKSLKKLSFPKCNVKIGKSNYWCEAQEVSINGSAGFIVFNKAQKRIVGGEVNTTNDVLLGYYDNNAGNYYINTFSKTTKTKKIACLGDSITEGVNAGGWQWHRYIDTWCKSNGINSIVTNLGIGGTSVCTSSYVTDRLKPFVNRLDTIPADADIVVIFGGTNDWGNNATLGSIIDTGTSSFYGAYKYILEWLAVNRPNAKVMTMTPLKRYFRGGGTTWVNAQTTPNNKGNLLQDYVRAVKEVSEMYAIPCVDLHNKSGLNPVLESVRNRFIGDGLHPTAEGNKKMYPVILDKMRPFLEYD
Physico‐chemical
properties
protein length:488 AA
molecular weight: 53704,79490 Da
isoelectric point:6,68241
aromaticity:0,09426
hydropathy:-0,38525

Domains

Domains [InterPro]
Coil
Unmapped
1–21
Coil IPR051532
IPR036514
STR
266–488
IPR036514
SSF52266
STR
266–483
SSF52266
IPR036514
STR
270–488
IPR036514
cd00229
ENZ
271–480
cd00229
IPR013830
ENZ
273–471
IPR013830
QBX26659.1
1 488
Architecture
STR
STR 266-488
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX26659.1
1 488
Domain Start End Length (AA) Confidence
N-terminal 1 63 63 0,9823
Central domain 64 280 218 0,4799
C-terminal 281 488 207 0,5012
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-63
Central
64-280
C-terminal
281-488

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan336
[NCBI] 		2548112 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus mitis
[NCBI] 		28037 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX26659.1 [NCBI]
Genbank nucleotide accession
MK448910 [NCBI]
CDS location
range 39830 -> 41296
strand +
CDS
ATGAATAACCTTGAAAATCTAGCAACGGAAATCGGTAAGGATATCAAGGATATCAAGACGCGTTACGCAACTAAAGAAGAGCTTCATGAGGCAACTGAGATAGATTATTCTCAGATTGTCACACATGAAGAATTAGACGGCAAGCATTATCTGACAGAACATCAATCGCTTGAAGAGTATGCTAAGAAATCTGAAACGCCAGTTTTTCGGTTTGCTAAAGGGGATATCCCAAGTGGCGGTGTAGGTGCAACTGCAACGATTACTACCGCAGACCTAATGAATCCTGACAGTGTTAAGGTCGGAGATATCATTGAAGATTACTGGAGTGGAGCTACAGGTGCTAACCGAGGAATTTGGAAGGTGACAGCAGTTAATGGGACTAATGTCTCTGTTCAAGGAATTGGTGCGAGATTTTTACCAACACCTTACAACGACACTGAATTGAAACAAAGGATTTCAACTCTTGAAAGCCGTCCAAGCTCAGGAAGTGGTGGTCTCGGTACTGAAGAAATAGCTACTTATAGCAATACAGTCATCTATATTCCGAACGGGAATATCGTATACAACAAGAGCTTAAAGAAATTATCTTTCCCAAAATGCAATGTAAAAATCGGGAAGTCCAATTATTGGTGTGAGGCTCAAGAGGTTTCTATTAATGGTAGTGCAGGATTTATCGTGTTTAACAAGGCTCAAAAACGAATTGTTGGAGGCGAGGTTAACACGACTAATGATGTATTACTTGGATATTACGACAACAATGCTGGTAATTACTACATCAATACTTTTAGTAAAACGACAAAGACCAAAAAAATTGCTTGTTTGGGTGATTCGATTACTGAAGGTGTTAACGCTGGAGGTTGGCAATGGCACCGCTACATTGACACTTGGTGCAAAAGCAACGGTATTAATAGCATCGTCACGAATTTAGGAATTGGCGGAACATCTGTCTGTACTTCAAGTTATGTGACAGATAGATTGAAGCCGTTTGTAAACAGACTCGATACAATACCAGCTGATGCGGACATTGTAGTTATCTTTGGAGGAACGAATGACTGGGGGAATAATGCAACTTTAGGAAGCATTATAGATACAGGGACAAGTTCGTTTTATGGAGCATACAAGTACATTCTTGAATGGCTTGCTGTCAATCGTCCAAATGCGAAAGTGATGACAATGACACCTCTGAAACGATATTTTAGAGGTGGTGGTACGACTTGGGTGAATGCTCAGACAACACCAAATAACAAAGGAAACCTGTTGCAAGACTATGTTCGAGCGGTAAAAGAAGTATCTGAAATGTACGCTATCCCTTGCGTTGATCTGCATAATAAGTCAGGTTTAAATCCTGTCTTAGAGAGTGTCAGAAATCGTTTCATTGGAGACGGTCTACATCCTACCGCAGAAGGAAATAAGAAGATGTATCCGGTCATTTTGGACAAGATGCGTCCATTCTTAGAATATGATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
553b92a988e1f779729d1cf472551b6b708a73bdb2860c21160d0f8cb5710a88
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8092
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank