Protein

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Genbank accession
ACP44102.1 [GenBank]
Protein name
putative tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARPFEGALNDLLQGVSQQVPRERVAGQCSAQVNMLSDPVTGIRRRPGSLFVSVHDFGPIGEGDALYTQYLERGADGRHLVINTNTGGWWLLDREAKNIVSEGNLSYLLAADRRSIQTTSMGGVTYILNTEKRPSATTDNSDKKDPKTTGFYFVKSGAFSKEYDISVVWSEGSQTVTYTTPDGTTAGDADQSVPEAIARKLVEALIAVGVDFAVRVGPYIYFELITGTDLKITSTSGSPYIGYSNQSQVNLETDLPARLHPSADGALCAVGQSERALVWYRYSSEKGVWLESGDYNSVTAISVDVPYKIVDDNVEQHIMEGRLAGDDLTNPAPTFLEERRITGIGTFQGRLVLLSGAYVCMSATGEPDRFFRSTVSSLDPTDRIDIASGSAQNSVFRQALQFNKDLILLGDSTQAVVPSLQQLLAPDNASVVLTSDLACNAFVAPVTTSQTLMYPAPRSEAFSAVLELVPSQYTSSQYVSQDVTTHIPRYIEGEARFMQSASAANIVLMATTGDNRQVIAHEYHFTSQGKVHQAWHKWVFPYRVASLHFARDRVVLFAADDAGSTDKITISTIDPKQGGVTFDVDRLPHLDSMSIVPVNDGKGIVPIYMRPWVSEGKLTGSVATGALASEEVAIDVDEVSWEFTVEPGFKDSQIYLGFRYESLFAPTPPMLKDQNDTLISTAPVRLLRYELTTRNTGEFDVRIVDPTIGLDYSNSKTSLVFGTDDVQLNQALVSDLSRVPVPCRSNAQSTEMYLSTDGTQDMNILEIEYIIRYNQRRRRV
Physico‐chemical
properties
protein length:780 AA
molecular weight: 85607,94480 Da
isoelectric point:4,90222
aromaticity:0,08590
hydropathy:-0,21000

Domains

Domains [InterPro]
IPR058003
9–780
IPR058003
ACP44102.1
1 780
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VP93
[NCBI] 		641832 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ACP44102.1 [NCBI]
Genbank nucleotide accession
FJ896200 [NCBI]
CDS location
range 24741 -> 27083
strand +
CDS
ATGGCTCGACCATTTGAGGGTGCATTGAATGACCTGCTGCAAGGTGTGTCCCAACAAGTTCCACGTGAGCGTGTGGCTGGACAATGCTCTGCGCAAGTTAACATGCTGTCCGACCCAGTAACAGGTATCCGTCGTCGTCCCGGTAGTCTGTTCGTGAGTGTGCACGATTTCGGCCCGATTGGTGAGGGTGATGCACTGTACACGCAGTATCTCGAACGAGGTGCTGATGGACGACACTTAGTAATCAACACCAACACAGGCGGCTGGTGGCTCTTAGACCGTGAGGCTAAGAACATCGTGAGTGAGGGCAACTTGTCTTACCTCCTAGCGGCTGACCGTCGCAGTATCCAGACTACCAGTATGGGCGGTGTTACGTACATTCTTAACACCGAGAAGCGTCCGTCTGCAACGACTGACAACTCTGACAAGAAAGACCCGAAGACAACAGGCTTCTACTTCGTCAAGAGTGGTGCGTTCAGTAAAGAGTACGATATTTCCGTAGTGTGGTCTGAGGGTAGCCAAACTGTGACATACACCACGCCTGATGGTACAACCGCAGGTGACGCAGACCAATCTGTACCGGAAGCAATCGCACGTAAACTCGTGGAAGCTCTGATTGCAGTTGGTGTGGACTTCGCTGTGCGTGTTGGCCCGTACATTTACTTTGAACTAATCACAGGTACTGACCTTAAAATCACCAGTACGTCAGGTTCGCCTTACATTGGCTACTCAAACCAATCACAGGTAAACCTAGAGACTGACCTCCCTGCGCGTCTGCATCCGTCTGCTGATGGTGCGTTGTGTGCTGTAGGTCAATCAGAGCGTGCGCTTGTGTGGTATCGTTACAGTTCCGAAAAGGGTGTTTGGTTGGAATCTGGTGACTACAACTCTGTGACCGCTATTAGCGTGGATGTGCCCTATAAGATTGTCGATGACAACGTGGAGCAACATATCATGGAGGGGCGTCTCGCAGGTGATGACTTAACTAACCCTGCACCGACATTCCTTGAAGAACGCCGCATCACTGGTATTGGTACGTTCCAAGGTCGCTTAGTGCTTCTGTCTGGTGCGTACGTCTGTATGAGTGCCACTGGCGAACCAGACCGTTTCTTCCGCTCTACCGTGAGTTCCCTTGACCCAACAGACCGTATTGACATTGCATCCGGTTCGGCTCAGAACTCAGTGTTCCGCCAAGCGTTGCAGTTCAACAAGGACTTGATTCTACTTGGTGACAGCACACAGGCGGTAGTACCGTCCCTGCAACAGTTACTTGCACCTGATAACGCAAGTGTGGTGTTGACCTCAGATTTGGCCTGTAATGCGTTTGTAGCACCTGTTACAACCTCACAGACCCTGATGTACCCTGCACCTCGAAGCGAAGCATTCAGCGCAGTTCTGGAGCTTGTACCGTCACAGTACACCTCGTCTCAGTACGTATCTCAAGACGTTACGACTCACATCCCTCGTTACATTGAGGGTGAGGCTCGTTTCATGCAGAGTGCGAGTGCTGCGAACATCGTACTAATGGCAACTACTGGCGACAACCGTCAGGTGATTGCTCACGAGTACCACTTCACAAGTCAAGGTAAAGTGCACCAAGCATGGCACAAATGGGTGTTCCCGTACCGTGTCGCTAGTCTACACTTTGCGCGTGACCGTGTTGTACTGTTTGCCGCAGACGATGCTGGTAGCACTGACAAAATCACCATCTCGACCATCGACCCTAAGCAGGGTGGTGTGACGTTTGATGTTGACCGCTTACCGCACCTAGACTCGATGAGCATTGTGCCCGTCAATGATGGTAAGGGTATCGTGCCAATCTACATGCGTCCGTGGGTATCTGAGGGTAAGTTGACTGGTTCTGTTGCTACAGGTGCGTTAGCGTCTGAGGAAGTGGCTATTGATGTGGACGAGGTTTCATGGGAATTCACTGTAGAGCCGGGTTTCAAAGACTCGCAAATCTACTTAGGTTTCCGCTACGAATCGTTGTTTGCGCCAACGCCACCTATGCTGAAAGACCAGAACGATACTCTAATCAGTACTGCTCCGGTTCGACTGTTGCGTTATGAGTTAACAACTCGAAATACAGGTGAATTCGATGTACGCATCGTTGACCCTACTATCGGGCTAGACTACTCAAACAGCAAAACCAGCCTAGTGTTCGGCACTGACGACGTTCAGTTGAACCAAGCTCTAGTGTCTGACTTGTCACGTGTCCCTGTACCGTGTCGAAGCAATGCACAGTCCACCGAAATGTACTTGAGTACTGACGGTACACAGGATATGAACATTCTGGAAATTGAATACATCATTCGTTACAACCAACGCCGACGTCGCGTATAA

Tertiary structure

PDB ID
1ff79a3ec3642ca77a123d9d32a6ddb09079c926da205210eb8a8fd7e32f5cb8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8933
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A new group of cosmopolitan bacteriophages induce a carrier state in the pandemic strain of Vibrio parahaemolyticus Bastias,R., Higuera,G., Sierralta,W. and Espejo,R.T. 2010 20105216 GenBank