Protein

View in Explore
Genbank accession
QQG33338.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,67
Protein sequence
MSSNTDIIALLSSDADKAVDQVIEDSKRLHIVVNGTGTEQAVAEDGSLLPSVRKALIDNLYFKTPPLPWRNGGSVNEFNQLYSFTDVSGNTTWWYAPGATVSNPVVMRDSPINDGKFKVFLDKTNIADIYAPLNSPNFVGNPRVPTPAPGDNSQSIPTTGWVQSEMQDLEDLIISSMRGEFENITVRNDAILQDTYINGEFIVTSDKLAAANTEATFRRIRMVGTGTTGTAATEIAFEQNTTPPPGVSTKTNIKPFAVSTGILTVDQINGKAAQVGDVAVATDSLNVEGYMRGDYLHLEGNNRNTADRPQLIVDGIAEIETLRVTGTIEGVKADVDGLDIHPRSVTVDEGLAVAKDTTMTGKLTVGGTTKVGNLEVTGTLSGVAISVDGKDIKPRSVNTGNLVATGDVQISGTTTATGKITTQDLEVLGTLTANLDLSGSDLSVDNINVTQTATITDLVVTGTTTGVKGDVEGEAIAPASVAATGTVSAASMSTTGNMAVGGNLTVTGDFRPASVDTGDIEADTITVNGNITQTTGTTKIVNLEVTGTTTGVTADVNGDDISPRSVTTTAGVNVGAALNVTGKTTLGDVDFTGTVTGLDLDLSQKNITVKSIAAVDPSAFGDVTTDNLTNGEMIITRDIQVLGDILDADGNPVNTFDVTGKDILPNSVQSATFIRGKTLDVSDGSTLRGPVEFRNGLTVTFGDIMSPQGKSTFNDVQVNGALTDADGNVIGSVESIKGKVIEPRSVVATVSVQAPRLQSTGDILGQSATITNNVSAGTLGVSGLTNLAETRVNAKLTGQTTEFETLLLKRVAGQDTPRLVVQGDSDLQGDLNVSGTITGVVDLTAQDINMNSLGLAQGLTAGGGITSFSTVKGVNGVFGEGSTAPGAIGLQSMTNAKVATDLLVGEDLRVEGDTNLFGNLSVTGTITGNMNFSGKTIAPATVNATTVTATNLTVTGTIDLPDSPIVAQEITATNVEATGKMVAGKYSTTPKTTNATTATFTPDGTTSIYNVNVQADTEVQAPAGLLSSGKGESIFIYFEQDTTGHAVTFSSAFVVHNAATVSNAANSITIANLVYRGTGPLIDVFLTGR
Physico‐chemical
properties
protein length:1089 AA
molecular weight: 112423,71920 Da
isoelectric point:4,37310
aromaticity:0,04132
hydropathy:-0,03554

Domains

Domains [InterPro]
DC_0062
STR
2–427
DC_0062 DC_0092
IPR058969
ATT
14–120
IPR058969 DC_0194 IPR058970
QQG33338.1
1 1089
Architecture
STR
ATT
STR
STR
STR 2-13 | ATT 14-120 | STR 121-621 | STR 676-1089
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage PcCB7V
[NCBI] 		2798043 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pectobacterium sp.
[NCBI] 		1913084 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQG33338.1 [NCBI]
Genbank nucleotide accession
MW367417.1 [NCBI]
CDS location
range 28305 -> 31574
strand +
CDS
GTGTCATCAAATACCGATATCATTGCCCTGTTGAGCAGCGATGCTGACAAGGCAGTTGACCAGGTCATCGAAGACTCCAAACGTCTTCACATCGTGGTCAACGGAACAGGTACGGAGCAGGCAGTGGCAGAAGACGGGAGCTTGCTCCCTTCTGTCCGTAAAGCCCTCATCGACAACCTGTATTTCAAAACCCCGCCCCTGCCGTGGAGAAATGGTGGCTCTGTCAACGAGTTCAACCAGCTTTATTCCTTCACTGACGTAAGCGGAAACACCACGTGGTGGTATGCGCCGGGCGCTACAGTTTCAAATCCGGTTGTCATGCGTGACAGCCCGATCAATGACGGTAAGTTCAAGGTGTTCTTGGACAAGACCAACATTGCAGACATCTACGCACCGCTGAACTCCCCTAACTTCGTTGGCAACCCTCGTGTTCCGACGCCTGCGCCGGGAGACAACAGCCAGTCCATCCCAACTACGGGGTGGGTTCAGTCAGAGATGCAGGATCTTGAAGATCTGATCATATCCTCCATGAGGGGTGAGTTCGAGAACATCACTGTCCGTAATGACGCGATTCTTCAGGACACGTACATCAACGGCGAGTTCATCGTTACCAGCGACAAGCTGGCAGCAGCGAACACCGAGGCCACCTTCCGCCGTATTCGTATGGTCGGGACCGGGACTACTGGGACAGCGGCTACGGAAATTGCTTTCGAGCAGAACACCACCCCTCCTCCGGGAGTTAGCACAAAGACTAACATTAAACCGTTCGCCGTGTCAACTGGTATTCTGACGGTTGACCAGATCAATGGTAAAGCCGCCCAGGTCGGTGATGTGGCTGTGGCTACTGACTCCCTGAATGTGGAGGGCTACATGCGTGGGGACTATCTCCACCTGGAGGGGAACAACCGAAACACTGCGGATCGTCCACAACTGATCGTCGATGGTATCGCAGAGATAGAAACCCTGCGTGTGACCGGGACCATCGAAGGGGTAAAAGCCGACGTTGACGGACTTGACATCCACCCACGTAGTGTTACAGTGGATGAGGGTCTGGCTGTTGCAAAAGACACCACTATGACCGGGAAACTGACAGTTGGTGGAACCACCAAGGTCGGCAACCTCGAAGTGACAGGCACTCTGTCTGGTGTGGCAATCAGTGTTGATGGCAAGGACATTAAGCCGCGCTCTGTGAACACAGGCAATCTGGTTGCGACGGGTGATGTGCAGATCAGCGGCACCACTACTGCAACAGGCAAGATCACCACTCAAGACCTCGAAGTTCTGGGAACCCTGACGGCAAATTTGGACCTGTCTGGTTCAGACCTGAGTGTTGATAACATCAATGTGACCCAGACGGCAACGATCACGGATCTCGTCGTGACCGGAACAACCACGGGTGTTAAGGGTGATGTTGAGGGTGAGGCAATTGCACCTGCAAGCGTCGCAGCAACCGGGACTGTCTCTGCTGCTTCCATGTCCACCACAGGAAACATGGCGGTTGGTGGTAACCTGACCGTAACGGGTGACTTCCGCCCGGCGAGCGTTGACACTGGGGATATTGAAGCCGACACCATCACGGTGAACGGGAACATTACCCAGACGACTGGCACCACCAAGATCGTCAACCTAGAGGTTACCGGGACGACAACTGGCGTAACTGCGGATGTCAACGGAGACGATATTTCTCCTCGTTCCGTGACCACGACTGCCGGGGTTAATGTCGGCGCGGCCCTGAACGTGACTGGAAAGACTACCCTCGGGGACGTTGATTTTACTGGAACTGTTACCGGACTGGATCTTGATCTTTCTCAAAAGAACATCACCGTTAAGTCAATTGCTGCGGTTGACCCATCTGCCTTTGGCGATGTCACCACAGATAATCTGACCAACGGTGAGATGATCATCACTCGTGACATTCAGGTTCTGGGTGATATTCTGGATGCAGATGGTAATCCTGTCAACACCTTTGATGTAACAGGTAAGGATATTCTACCGAACAGTGTTCAGTCTGCGACGTTTATCCGTGGCAAAACCTTGGATGTCAGCGACGGTTCTACCCTTCGCGGGCCTGTGGAGTTCCGTAACGGACTGACAGTAACTTTTGGCGACATCATGTCTCCCCAGGGGAAGTCAACGTTCAACGATGTGCAGGTCAATGGTGCATTGACGGACGCCGACGGCAACGTCATCGGCTCCGTGGAAAGCATCAAGGGCAAGGTCATTGAACCACGCTCAGTTGTGGCTACCGTCTCTGTACAGGCCCCCCGTCTCCAATCAACCGGGGATATTTTGGGTCAGAGTGCGACGATCACCAACAACGTCTCTGCTGGGACCTTGGGTGTTTCCGGATTGACAAACCTAGCAGAAACCCGTGTTAATGCGAAGCTGACAGGGCAGACTACAGAGTTCGAAACTCTGCTCCTGAAGCGCGTTGCTGGTCAAGATACACCTCGCTTGGTTGTTCAAGGTGACTCTGATCTCCAAGGAGACCTGAATGTCTCCGGGACTATCACCGGAGTTGTTGACTTGACGGCGCAAGACATTAACATGAACAGCCTTGGGCTGGCTCAGGGTCTTACTGCCGGGGGGGGTATTACTTCTTTCTCTACCGTAAAAGGTGTCAACGGTGTCTTTGGTGAAGGTTCTACGGCCCCTGGTGCCATCGGCCTTCAGTCCATGACTAATGCGAAGGTTGCAACAGACCTTCTTGTTGGTGAAGACCTTCGTGTGGAGGGCGACACAAACCTGTTTGGTAACTTGTCTGTGACAGGAACCATTACAGGAAACATGAACTTCTCAGGTAAAACAATCGCCCCGGCGACTGTTAACGCGACTACGGTCACGGCTACCAACCTGACAGTCACTGGAACCATTGATCTGCCCGATAGCCCTATCGTGGCTCAAGAAATTACCGCGACAAACGTCGAAGCAACTGGTAAAATGGTTGCAGGTAAGTATTCTACCACACCGAAGACTACCAATGCAACAACGGCGACGTTTACTCCAGATGGGACTACAAGCATCTACAACGTCAATGTGCAGGCAGACACAGAGGTTCAGGCCCCTGCTGGGTTGCTGTCTTCAGGTAAAGGAGAGTCAATCTTCATTTACTTCGAGCAAGATACGACTGGACATGCGGTAACGTTCAGCAGTGCGTTCGTTGTTCACAACGCTGCGACTGTCAGCAACGCTGCAAACTCCATTACGATCGCTAACCTCGTGTATCGTGGAACTGGCCCGCTGATCGATGTGTTCTTGACCGGACGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
39c5746f1a38c265be04407ce15502b61362521180dcc3f3a35e370c34fb9dc3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5485
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of novel berlinvirus and novel certrevirus lytic for Pectobacterium car. car Petrzik,K., Kmoch,P., Vacek,J. and Brazdova,S. 2021-04-29 — GenBank