Protein

View in Explore
Genbank accession
YP_007676323.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,67
Protein sequence
SGVLERIDNGQRIVKDDGTNAGSIAAGSAMPSGYSLGNERTDDYPWFKRDGYRVYEVEKEVAAAYNSTELSTANTNMGTAQTAYDNAVSTESTEKGDYDSEVTACNIGSSNIPASAYLKDAAPEDIEILTINDYTFVLNKNKTTAMKTTTSAAVPNVAFVVIRIVAYNSDYSVTLNGTTVTHSTPDTVAGATTDSGSIAAALTSSINALTGFSATQVGPGIYIEGTSAFSISTSGSTTEEGIFAFQDQINVASRLPNQCENGYRVRVTNSGDVTADDIYVEFQTTNSAARGPGVWEETIGPSLEFEIDETTMPHQLIRQANGVFKYEPVTWDDRLVGDNTTNPIPSFIGKKINNMFFYRNRLGLLSNEAAIMSRAGDYFNFFANSSQVVAPDDPIDLQATSVKPVTLNYTLATSIGLLVFGPNEQFVLSTDADILSPTTTKINTISTFECDAEIDAVAVGTTQAFISKSNLYSKLFLMLNVQKEAAATIDEATTNVPEYVPSDIDSMTASPAMSIVSLGKSGSNTVYQHRFFMQGENRVQTWYKWQLTGDLRLQFFDKTTFYAVTSSGSNVYLTSYDLTQASESGYLTLPTGEKTDVCLDMFNVNPYRTYSTSTKKTTVNLPFDHITGKKLAVVAIGTYIGDTISATSESEGSVFYFEDSDISSNQVLLNGDYRGRDLIIGYVYDMELELPTLYPTQVEGRSSVSDVTSDLILHRLKVSTGLSGPITYKVDITGKDEWTNIINVTLPNTYVLNNVNLSASALHDVPIYQRNENVNIKIIGDTPFPISLLNIVWEGNYNRRFYRRS
Physico‐chemical
properties
protein length:805 AA
molecular weight: 87847,47190 Da
isoelectric point:4,53947
aromaticity:0,09689
hydropathy:-0,22099

Domains

Domains [InterPro]
DC_1750
ATT
1–113
DC_1750 IPR058003
YP_007676323.1
1 805
Architecture
ATT
TTP
ATT 1-113 | TTP 114-803 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007676323.1
1 805
Domain Start End Length (AA) Confidence
N-terminal 1 55 55 0,9280
Central domain 56 257 203 0,3706
C-terminal 258 805 547 0,2188
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-55
Central
56-257
C-terminal
258-805

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage KBS-P-1A
[NCBI] 		889951 Uroviricota > Caudoviricetes > Autographivirales > Sednavirus SRIP2 >
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007676323.1 [NCBI]
Genbank nucleotide accession
NC_020865 [NCBI]
CDS location
range 1 -> 2419
strand +
CDS
GTCTGGTGTACTTGAGCGTATCGATAACGGTCAACGTATTGTCAAAGATGACGGTACTAACGCTGGCTCGATCGCTGCAGGTTCTGCTATGCCTTCTGGTTATAGCCTGGGCAATGAGCGTACAGATGACTACCCATGGTTTAAGCGTGACGGCTACCGTGTCTACGAAGTAGAGAAAGAGGTAGCTGCTGCTTACAACTCTACCGAACTGAGCACTGCTAACACCAACATGGGTACGGCTCAGACTGCATACGACAATGCTGTCAGCACTGAGTCAACTGAAAAAGGTGACTACGACAGTGAGGTTACTGCTTGTAATATCGGTTCGTCAAATATCCCTGCAAGTGCTTACCTGAAAGACGCTGCTCCTGAGGACATTGAAATCCTCACGATCAACGACTATACCTTTGTCTTGAATAAAAACAAGACAACAGCAATGAAGACTACTACGTCTGCAGCTGTGCCAAATGTCGCATTTGTTGTCATCAGAATTGTTGCCTATAATTCTGACTATTCAGTCACCCTTAACGGTACTACCGTAACCCACTCTACACCTGACACAGTTGCAGGAGCCACTACTGACTCTGGTAGTATTGCAGCTGCTTTGACATCTTCAATCAACGCTTTGACTGGATTCAGTGCTACCCAAGTTGGACCTGGTATTTATATTGAAGGTACTTCTGCTTTTAGTATTAGTACATCTGGTTCAACGACTGAAGAGGGTATCTTTGCTTTCCAAGATCAAATCAACGTTGCATCTCGTCTTCCTAACCAATGTGAAAATGGTTACAGAGTTCGTGTGACGAACAGTGGAGATGTAACTGCAGATGATATCTACGTTGAGTTCCAGACTACTAACAGTGCAGCCCGTGGTCCTGGTGTGTGGGAAGAGACTATTGGTCCTAGTTTAGAATTTGAGATCGATGAGACTACCATGCCTCATCAGTTGATTCGTCAAGCAAACGGTGTGTTTAAGTATGAACCTGTGACTTGGGATGACCGTTTGGTCGGTGACAACACCACTAACCCTATCCCCAGTTTCATCGGTAAGAAGATCAACAACATGTTCTTCTACCGTAACCGCCTTGGTCTACTGTCTAACGAAGCAGCGATCATGAGCCGTGCTGGTGACTACTTTAACTTCTTTGCTAATAGCTCTCAAGTCGTTGCGCCTGACGATCCTATTGACCTTCAGGCTACCTCTGTCAAACCTGTTACACTGAACTACACGTTGGCTACTAGCATTGGTTTGCTGGTGTTTGGTCCTAACGAACAGTTTGTCCTGTCTACTGATGCTGATATCCTCAGCCCAACTACAACTAAGATCAACACCATCAGCACGTTTGAGTGTGATGCAGAGATCGATGCCGTAGCAGTAGGCACAACTCAAGCATTTATTAGTAAATCTAATCTATACAGTAAACTCTTCTTGATGCTTAACGTGCAGAAAGAAGCAGCTGCTACGATTGATGAGGCTACTACAAACGTACCTGAGTATGTGCCAAGTGATATTGATTCAATGACAGCCTCACCGGCTATGTCTATTGTGTCTCTTGGTAAATCAGGTTCAAACACCGTGTACCAGCACAGGTTCTTTATGCAAGGTGAGAACCGGGTGCAGACCTGGTACAAATGGCAACTGACTGGTGATCTGCGTTTACAGTTCTTTGATAAAACTACCTTCTACGCTGTTACTAGCTCTGGCAGCAACGTGTACCTGACGTCCTATGACCTGACACAAGCCAGTGAATCTGGTTACCTGACTCTGCCTACGGGTGAGAAAACAGACGTGTGTCTGGATATGTTCAATGTCAACCCGTACAGAACTTACAGCACTTCAACTAAAAAGACCACTGTTAACTTACCTTTTGATCACATCACTGGTAAGAAGCTAGCAGTTGTAGCTATCGGTACTTATATCGGTGATACAATTTCTGCTACCAGCGAGTCCGAAGGTTCGGTGTTTTACTTTGAAGACTCTGATATATCCAGCAATCAAGTGCTGCTAAACGGTGATTACCGTGGACGTGACTTGATTATTGGATATGTGTACGACATGGAGTTGGAGCTACCTACTCTGTATCCTACACAGGTTGAAGGTCGGAGCAGTGTATCTGACGTTACCTCTGATCTAATCCTACACCGTCTTAAGGTCTCCACAGGTCTTAGCGGTCCTATTACCTACAAGGTTGATATCACAGGTAAGGATGAGTGGACTAACATTATTAACGTTACGCTGCCTAATACCTACGTATTGAACAACGTCAACCTTTCTGCTTCTGCTTTACACGACGTTCCTATCTATCAACGGAACGAAAACGTTAACATCAAAATCATTGGAGATACTCCTTTCCCAATCAGTCTGCTAAACATCGTTTGGGAAGGTAACTACAACCGTCGATTCTACCGCCGCTCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
4794051eae61071dd08b3f5785f4d9f3f0c26f9e86a235a976b35bf18043a251
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2926
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage KBS-P-1A Henn,M.R., Lennon,J., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank