Protein

View in Explore
Genbank accession
WDS61269.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKKLLYDYVFDASAQTVTINGHVDLKKLLFINNATRGTTIYALGDSNLRVTNTSYASATDQTTFTLNFDTSTANHADADKLQIFIDEEGAEFKPTETFVDPVSKLRVSNPNTLIDTDFEYGLQSTKWETLERIHQVPSFYSSTGDVPLEGVDKIESVNNSKEVTVTMKAPHGLVNGIPLDIRGLSDLFAEGTFIIKAVPSDKTFVYETTRALTTTGDLKTVYTNVIVGRFYVGSKLDFGQYSAVTTDQATQSTLTITTPVETNFALGTQFYITNSIAVKRKEFDGRSFTSGGAVDWEENISQYETNQMTLWEPKGTDTQQFLVANASYMDSSTNTITHNINGTATNHGLVTGDMMFMVYKNGNVTGFQAAGQTGTNASSTNPGNGIYYVIRIDDQNYQLADSASNCAGSNPVSFTLSDAAQAATQLEMTLFGRGYQSTTMNPYEFDIIEAGRTDDDAWGRKQRYFWPESINVSTDQIKIPRHEFKDGQPVVFVSGPSPNSVPGNMSNGYPYYIKYVDADTIRLTSSFSSRDPNHEGPYYGAGVGGQLNITSQGNLYTWGTPFSLWPAIKLAYTVTNNASGGSQNSTSWANRNRIICEHSIVNFVEGDKVVFFSQSNVPSGITETNNNWDQNMKDRIYYVRFPAINTGVSTNNFEFSVSRTPNGPLVDVTGWSNTENSFVLKIEELATSNTWFSTQHGFDNNEEGEPNYWLKYRFDAQNSTGSTVGGMTANHWYWMIPVTNNHFRVTLASSSTSNTQPSSTNQIPQKNARSNIINITSFSGDVTNFRHKFRGEDIDNPYEDTFYIPNHGFTSGTAVRYNSNGNPSIGGLQNGTTYYVRNASTDRFELTTTFDGVRLNMSSGSATSTPNHYFEDVSPKGAIDGSFEITAKNADNLSYDLQADTQIFGKTLTFQPQKCIDLKRGKFRINDHGLKTGVSVVYTKDAAGTSIGQNPPPDAAQQAAGYNSLTSGDTYYVYRVSKDYFGLATTLANAQAGTIITEYFNFGDAVTTNRQHTLYANSVFGEVTGNGLLTYTTKDKTWDGSSNSNVNTYSNYLTIGTHEFYNGDEVEYNGFAGATPIVGLEFGQKYFIHRWGSTIISFHKTRSDSYRRRNQIRIFGPGTGSLHVVRIATNLLKGTVDRGKWNSTSEYFAGDIVQHPYSYQGQTTDLYYVATQDSQGNYDDLRYNYSNANNVGRTPPNSVRDAWWKRLNDYTQPVSTGGGLETNMINQYTPGESILMDDERYVGYGYGYGYYNYNSVSNGGTTVSVPGSTYHNFEIGDGVYYRNEGKWRALEDDIDSGSIPTDYSGLVDGSIYFVNTINYYQFTLHQNPEDARQGVNPITLGHSTGNSSYWSQHRFYKTESRVVSAKIRSISDSDEMTVDEPQTPAVITFDPQETTPITVCDITTEIFYFGTTDDEGNDITDQMLTGTRVIYSHDDNSTAIGGLTKDANYFLINLGDGYFRLAGNGTNDYTRRQYAYSGNRTNITNTGQGNKHSISISTENYNNVSYLLPTALYVKPSSYALHRPFDGGVEINPGTSADSSVVRQTRRYFRYQSGKGLQYSTATNYNPPIEVRSLVGGTDGNGDPIATVVTRRPHYMNVGDHLSMRDTSVATGTNHYNTENGVVATVTDDFTLTYTLAGTPSDITPAGFPTLNKNSWTNSVVRAGMFDDQNGFFFEYDGQYLYAVRRSSTQQCAGTVTCTYGSQIVDGNGTVFTKQLAPDDYVIIRGQSYKIAFVVSDTRLYLTRTYQGITSPQIIMTKTEDTKTRQSNFNIDRCDGSGQTGFEMDLKKLQMCYIDYSWYGGGKIRYGFKDQFGKVFYAHQYVHSNKFTEAYFRSGNLPARYEVANIGDRTGTARFSPSLFHWGASVIMDGLFEDDKAYLFSSSTDTIYLLNQKSDGDEDQANREYPMLSLRLAPSVDAGVTGNLGTRDLINRMQLQMKQVSITISDGGNSVDSFTNNQNQDPRKSCTVKLLLNADLSQPNWDAVQAPSLSEVIQHSHSTDTEFAKLTDRTNAGINIFEFRAAANDTTVVELGDVATLGNSILGGDYTFPNGPDTLTIVVIPDDSYQSSSRRYTICSARISWSESQA
Physico‐chemical
properties
protein length:2087 AA
molecular weight: 231182,91260 Da
isoelectric point:5,12082
aromaticity:0,11739
hydropathy:-0,52726

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WDS61269.1
1 2087
Domain Start End Length (AA) Confidence
N-terminal 1 64 64 0,1499
Central domain 65 263 200 0,4949
C-terminal 264 2087 1823 0,6780
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-64
Central
65-263
C-terminal
264-2087

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-BM3
[NCBI] 		753087 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WDS61269.1 [NCBI]
Genbank nucleotide accession
OQ319121 [NCBI]
CDS location
range 116054 -> 122317
strand -
CDS
ATGGCAAAGAAATTACTTTACGATTACGTATTTGACGCTTCAGCGCAAACAGTGACAATCAATGGTCACGTTGATCTGAAGAAACTTCTGTTTATCAATAATGCTACTAGAGGCACTACAATTTATGCTCTGGGTGACTCAAACCTAAGAGTTACAAATACCTCGTATGCATCAGCAACGGATCAAACAACGTTCACTCTGAACTTTGATACGTCAACTGCTAACCATGCAGATGCCGACAAGCTCCAAATTTTTATTGATGAAGAGGGCGCAGAGTTCAAACCAACTGAAACTTTCGTTGATCCAGTTAGTAAACTGAGAGTTTCAAACCCAAACACTCTGATTGATACCGACTTTGAGTACGGTCTTCAGTCAACTAAGTGGGAAACACTTGAGAGAATCCACCAAGTTCCATCTTTCTATTCCTCCACGGGCGACGTTCCTCTGGAAGGCGTTGACAAAATTGAATCTGTAAATAATTCAAAAGAAGTCACCGTCACCATGAAGGCTCCTCATGGTCTTGTCAACGGTATTCCTCTGGATATCCGTGGTCTTTCTGATCTTTTTGCGGAAGGTACTTTCATCATCAAAGCGGTTCCTAGCGATAAAACCTTTGTATATGAAACAACCAGAGCTCTGACCACAACAGGAGATCTCAAAACAGTTTATACTAACGTAATTGTTGGTAGATTCTACGTTGGTTCTAAACTTGATTTCGGTCAGTATTCTGCTGTTACTACTGACCAGGCAACTCAAAGTACCCTGACGATCACTACCCCAGTAGAAACAAACTTTGCTCTGGGCACTCAGTTCTACATCACAAACTCTATTGCTGTAAAGAGAAAAGAGTTTGATGGTAGATCATTTACTTCAGGTGGTGCTGTTGACTGGGAAGAGAATATTTCTCAGTATGAAACAAACCAGATGACTCTTTGGGAACCAAAGGGTACAGATACTCAGCAGTTCCTGGTAGCAAATGCAAGCTACATGGACTCATCAACAAATACCATCACTCATAACATCAACGGTACTGCTACCAATCATGGATTGGTTACAGGTGACATGATGTTCATGGTGTATAAGAATGGTAACGTTACTGGATTCCAAGCTGCTGGTCAAACTGGTACGAACGCATCGTCCACAAACCCAGGCAATGGCATCTACTATGTTATCAGAATTGATGATCAAAACTATCAACTTGCAGATAGTGCATCAAACTGTGCAGGAAGTAATCCAGTTTCATTCACCCTGTCTGATGCTGCACAGGCTGCTACTCAGTTGGAGATGACATTGTTCGGTAGAGGTTATCAGTCTACCACAATGAACCCATATGAGTTTGACATTATTGAAGCTGGTCGAACAGATGATGATGCATGGGGTAGAAAGCAAAGATACTTCTGGCCAGAATCAATCAACGTATCAACAGATCAAATCAAGATTCCTCGCCACGAATTCAAAGATGGCCAACCAGTAGTCTTCGTTTCTGGACCTTCGCCTAACAGTGTTCCAGGTAACATGTCTAATGGTTATCCCTACTATATCAAGTATGTTGATGCTGATACCATTCGTCTGACATCAAGTTTCTCATCTAGAGATCCTAACCACGAAGGTCCATACTATGGCGCTGGTGTTGGTGGTCAGTTGAACATTACATCTCAAGGAAACCTTTATACTTGGGGTACTCCTTTTTCCCTGTGGCCAGCAATCAAACTTGCATATACTGTAACAAATAATGCTTCTGGCGGATCACAGAACTCTACTTCTTGGGCAAATAGAAACAGAATTATTTGTGAGCACTCAATTGTAAACTTTGTAGAAGGTGATAAGGTTGTATTCTTCTCCCAGTCAAACGTTCCTTCAGGTATCACTGAAACGAACAATAACTGGGATCAAAATATGAAGGATAGAATCTACTATGTAAGATTCCCTGCTATCAATACTGGTGTTTCCACAAACAACTTTGAATTCTCAGTATCCAGAACTCCAAATGGTCCTCTGGTTGATGTCACAGGATGGTCAAACACTGAGAACTCATTCGTTCTGAAAATTGAAGAACTAGCAACTTCAAACACTTGGTTCTCTACTCAGCATGGTTTTGATAATAACGAAGAAGGTGAACCAAACTACTGGTTGAAGTATCGTTTCGATGCTCAGAACTCCACTGGTAGTACTGTTGGTGGTATGACTGCTAACCATTGGTACTGGATGATTCCTGTTACTAATAATCACTTCAGAGTAACACTGGCATCTTCTTCTACCAGCAACACTCAGCCGTCCAGCACCAACCAAATTCCCCAGAAGAATGCTAGATCAAACATCATCAATATCACCAGTTTTAGCGGTGACGTAACTAACTTCCGCCACAAGTTTAGAGGCGAAGATATTGATAACCCATATGAGGATACCTTCTATATTCCCAACCATGGTTTCACATCAGGTACTGCAGTCAGGTACAATTCAAATGGAAACCCTTCAATTGGTGGTCTGCAAAATGGTACAACATATTATGTAAGAAATGCATCTACAGATAGATTTGAACTCACCACCACATTTGATGGTGTAAGACTCAACATGAGTTCTGGTTCTGCAACTAGTACACCAAACCACTACTTTGAAGATGTTTCACCTAAAGGTGCTATTGATGGTTCATTTGAGATTACTGCGAAGAATGCAGATAACCTCAGTTATGATCTGCAGGCAGATACTCAAATCTTTGGTAAGACTCTGACATTCCAACCTCAGAAATGTATTGACCTGAAGAGAGGAAAATTCAGAATCAATGATCACGGTCTCAAGACTGGTGTTTCAGTTGTTTACACTAAGGATGCTGCAGGTACTTCAATTGGTCAGAATCCACCACCTGATGCTGCACAGCAAGCAGCTGGTTACAATTCACTGACTTCAGGTGATACGTACTACGTCTATAGAGTTTCTAAGGACTACTTTGGTCTTGCAACCACTCTTGCCAATGCACAGGCAGGCACCATCATTACCGAATATTTCAACTTCGGTGATGCAGTCACTACAAACAGACAGCACACGCTGTATGCAAACAGTGTATTTGGTGAAGTCACTGGTAATGGTCTTCTGACTTATACCACGAAAGATAAGACTTGGGACGGTTCTTCAAACTCTAACGTCAATACCTACAGTAACTATCTTACTATCGGTACTCACGAATTCTATAACGGTGACGAAGTTGAGTATAACGGATTCGCTGGTGCAACACCTATTGTTGGTCTGGAATTCGGTCAGAAATACTTCATCCATAGATGGGGTAGTACTATCATCTCGTTCCACAAGACAAGATCAGATTCTTACAGAAGAAGAAATCAGATTAGAATATTTGGTCCTGGTACTGGATCACTTCACGTCGTTAGAATTGCAACCAACCTGCTGAAGGGTACAGTTGATAGAGGTAAGTGGAACTCTACTTCAGAATACTTTGCTGGAGACATTGTTCAGCACCCATATTCTTACCAAGGTCAAACTACTGATCTTTACTATGTTGCAACTCAAGACTCTCAGGGCAACTATGATGACTTGAGATATAACTATTCAAACGCAAATAACGTTGGTAGAACACCTCCTAATAGTGTTCGCGATGCATGGTGGAAGCGTCTGAATGATTACACTCAACCAGTATCAACTGGTGGTGGTCTTGAAACAAACATGATCAACCAGTATACTCCAGGTGAAAGCATCCTTATGGATGATGAGCGTTATGTTGGTTATGGTTATGGTTATGGTTATTATAATTACAACAGTGTTTCTAATGGTGGTACAACTGTATCAGTTCCTGGCAGCACCTATCACAACTTTGAAATTGGTGATGGTGTTTACTATCGTAATGAAGGTAAGTGGAGAGCACTTGAAGATGATATCGATTCAGGAAGCATCCCAACTGACTATTCTGGTCTTGTAGATGGTTCAATTTATTTTGTAAACACCATTAACTATTATCAGTTTACACTACACCAGAATCCAGAAGATGCAAGACAGGGTGTAAACCCAATTACTCTTGGACATAGTACTGGTAATAGTTCTTACTGGAGCCAACATAGATTCTATAAGACAGAATCCAGAGTTGTTTCTGCAAAGATTAGATCAATCTCTGATAGTGATGAGATGACGGTTGATGAACCACAGACACCTGCGGTTATCACATTTGACCCACAGGAAACTACTCCAATCACAGTTTGTGATATCACTACTGAGATCTTCTACTTCGGTACTACCGATGATGAAGGTAATGATATCACGGATCAAATGCTGACTGGTACTCGCGTTATCTATTCTCACGATGATAACTCTACTGCAATTGGTGGTTTGACTAAAGACGCTAACTACTTCTTGATCAACCTCGGTGATGGTTATTTCAGACTTGCTGGTAACGGCACTAATGATTACACCAGAAGACAGTATGCATACTCTGGCAATCGTACAAATATCACTAACACTGGTCAGGGTAACAAGCACTCAATCTCTATCTCGACTGAGAACTACAACAATGTTTCATACCTGCTGCCTACAGCACTGTATGTAAAACCATCTTCATATGCTCTGCATAGACCATTTGACGGTGGTGTTGAGATCAACCCAGGTACTTCTGCTGATTCTTCCGTTGTTAGACAGACCAGAAGATACTTCCGTTATCAGTCAGGTAAAGGTCTGCAGTACTCAACTGCTACCAACTACAATCCTCCAATTGAAGTAAGATCCTTGGTTGGTGGAACTGATGGAAATGGTGATCCAATTGCGACTGTTGTTACCAGAAGACCACACTATATGAATGTTGGTGATCATCTCTCAATGAGAGATACTTCAGTTGCAACTGGTACTAACCACTACAACACTGAAAACGGAGTTGTTGCTACCGTAACTGATGACTTTACGTTGACCTACACTCTTGCAGGAACACCATCTGATATTACTCCTGCTGGATTCCCAACACTGAACAAGAACTCCTGGACCAACTCCGTTGTTCGCGCTGGTATGTTTGATGACCAAAATGGATTCTTCTTTGAGTATGATGGTCAATATCTCTACGCTGTTAGAAGATCTTCTACTCAGCAATGTGCAGGTACAGTAACATGTACTTATGGTTCACAGATTGTAGATGGTAATGGCACAGTCTTTACTAAGCAACTTGCACCTGATGATTACGTTATAATTCGTGGTCAATCATATAAGATTGCATTCGTTGTTAGTGACACCAGACTTTATCTGACAAGAACTTATCAAGGTATCACCTCACCTCAGATCATCATGACGAAGACTGAGGATACCAAGACCCGTCAGTCCAATTTCAATATTGACAGATGTGATGGCAGTGGTCAGACAGGATTTGAAATGGATCTGAAGAAACTTCAGATGTGCTACATTGATTACTCCTGGTATGGTGGTGGTAAGATCCGCTACGGATTCAAAGATCAATTCGGTAAGGTCTTCTACGCTCATCAGTATGTACACAGTAACAAGTTTACTGAAGCATACTTCAGATCTGGTAACCTCCCAGCACGTTATGAAGTAGCGAACATTGGTGATAGAACTGGCACTGCTAGATTCTCACCATCACTGTTCCACTGGGGTGCATCGGTTATCATGGACGGTCTGTTTGAAGATGATAAGGCATATCTGTTCTCATCATCTACTGACACGATCTACCTGCTGAACCAGAAGTCAGACGGTGACGAAGATCAGGCAAACAGAGAGTATCCAATGCTTTCTCTGAGACTGGCACCTTCTGTTGACGCTGGTGTAACTGGTAATCTTGGTACTAGAGACTTGATCAACAGAATGCAACTTCAGATGAAGCAAGTCTCGATTACCATCTCTGACGGTGGTAATTCGGTTGACTCATTCACTAACAACCAAAACCAGGACCCTAGAAAGTCCTGTACTGTGAAACTTCTCCTGAATGCTGACTTGTCTCAACCTAATTGGGATGCAGTTCAAGCACCTTCACTCTCTGAAGTTATTCAGCACTCACACTCAACTGATACTGAATTCGCTAAACTTACTGATAGAACCAATGCTGGTATCAACATCTTCGAGTTTAGAGCAGCAGCAAACGACACTACAGTTGTAGAACTGGGTGATGTTGCAACTCTCGGTAACTCAATCCTTGGTGGAGACTATACCTTCCCCAACGGACCTGATACCCTGACAATTGTCGTCATTCCTGACGATTCCTACCAGTCGTCGTCTAGAAGATACACAATTTGTTCTGCTAGAATCTCCTGGTCTGAATCCCAGGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
73de7eb56fd6c08836cfaf959e74040d38cf2ea28d9c615b73ef2ccbd845ae57
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6396
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50