Protein

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Genbank accession
XBO82138.1 [GenBank]
Protein name
non-contractile tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARPFEGALNDLLQGVSQQVPRERVAGQCSAQVNMLSDPVTGIRRRPGSLFVSVHDFGPIGEGDALYTQYLERGADGRHLVINTNTGGWWLLDREAKNIVSEGNLSYLLAADRRSIQTTSMGGVTYILNTEKRPSATTDNSDKKDPKTTGFYFVKSGAFSKEYDISVVWSEGSQTVTYTTPDGTTAGDADQSVPEAIARKLVEALIAVGVDFAVRVGPYIYFELITGTDLKITSTSGSPYIGYSNQSQVNLETDLPARLHPSADGALCAVGQSERALVWYRYSSEKGVWLESGDYNSVTAISVDVPYKIVDDNMEQHIMEGRLAGDDLTNPAPTFLEERRITGIGTFQGRLVLLSGAYVCMSASGEPDRFFRSTVSSLDPTDRIDIASGSAQNSVFRQALQFNKDLILLGDSTQAVVPSLQQLLAPDNASVVLTSDLACNAFVAPVTTSQTLMYPAPRSEAFSAVLELVPSQYTSSQYVSQDVTTHIPRYIEGEARFMQSASAANIVLMATTGDNRQVIAHEYHFTSQGKVHQAWHKWVFPYRVASLHFARDRVVLFAADDAGSTDKITISTIDPKQGGVTFDVDRLPHLDSMSIVPVNDGKGIVPIYMRPWVSEGKLTGSVATGALASEEVAIDVDEVSWEFTVEPGFKDSQIYLGFRYESLFAPTPPMLKDQNDTLISTAPVRLLRYELTTRNTGEFDVRIIDPTIGLDYSNSKTSLVFGTDDVQLNQALVSDLARVPVPCRSNAQSTEMYLSTDGTQDMNILEIEYIIRYNQRRRRV
Physico‐chemical
properties
protein length:780 AA
molecular weight: 85624,01040 Da
isoelectric point:4,90222
aromaticity:0,08590
hydropathy:-0,20936

Domains

Domains [InterPro]
DC_0058
STR
1–780
DC_0058
IPR058003
TTP
9–780
IPR058003
XBO82138.1
1 780
Architecture
STR
STR 1-780
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XBO82138.1
1 780
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9935
Central domain 142 340 200 0,0625
C-terminal 341 780 439 0,2255
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-340
C-terminal
341-780

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpP_3
[NCBI] 		3158836 Uroviricota > Caudoviricetes >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XBO82138.1 [NCBI]
Genbank nucleotide accession
PP834370 [NCBI]
CDS location
range 29092 -> 31434
strand +
CDS
ATGGCTCGACCATTTGAGGGTGCATTGAATGACCTGCTGCAAGGTGTGTCCCAACAAGTTCCACGTGAACGTGTGGCTGGACAATGCTCTGCGCAAGTTAACATGCTGTCCGACCCAGTAACAGGCATCCGTCGTCGTCCCGGTAGTCTGTTCGTGAGTGTGCACGATTTCGGCCCGATTGGTGAGGGTGACGCGCTGTACACGCAGTATCTCGAACGAGGTGCTGATGGACGACACTTAGTAATCAACACCAACACAGGCGGCTGGTGGCTCTTAGACCGTGAGGCTAAGAACATCGTGAGCGAGGGCAACTTGTCCTACCTCCTAGCGGCTGACCGTCGCAGTATCCAAACTACCAGTATGGGCGGTGTCACGTACATCCTTAACACTGAGAAGCGTCCGTCTGCAACGACTGACAACTCTGACAAGAAAGACCCGAAGACAACAGGCTTCTACTTCGTCAAGAGTGGTGCGTTCAGTAAAGAGTACGATATTTCCGTAGTGTGGTCTGAGGGTAGCCAAACTGTGACATACACCACGCCTGATGGTACAACCGCAGGTGACGCAGACCAATCTGTACCGGAAGCAATCGCACGTAAACTCGTGGAAGCTCTGATTGCAGTTGGTGTGGACTTCGCTGTACGTGTTGGCCCGTACATTTACTTTGAACTAATCACAGGTACTGACCTTAAAATCACCAGTACGTCAGGTTCGCCTTACATTGGTTACTCAAACCAATCACAGGTAAACCTAGAGACTGACCTCCCTGCGCGTCTGCATCCGTCTGCTGATGGTGCGTTGTGTGCTGTAGGTCAATCAGAGCGTGCGCTTGTGTGGTATCGTTACAGTTCCGAAAAGGGTGTTTGGTTGGAATCTGGTGACTACAACTCCGTGACCGCTATTAGCGTGGATGTGCCCTATAAGATTGTCGATGACAACATGGAGCAACATATCATGGAGGGGCGTCTCGCAGGTGATGACCTAACTAACCCTGCACCGACATTCCTTGAAGAACGCCGCATCACTGGTATCGGTACGTTCCAAGGTCGCTTAGTGCTTCTATCTGGGGCGTACGTCTGTATGAGTGCCTCTGGCGAACCAGACCGTTTCTTCCGCTCTACCGTGAGTTCCCTTGACCCAACAGACCGTATTGATATTGCATCCGGTTCGGCTCAGAACTCAGTGTTCCGCCAAGCGTTGCAGTTCAACAAGGACTTGATTCTACTTGGTGACAGTACACAGGCGGTAGTACCGTCCCTGCAACAGTTACTTGCACCTGATAACGCAAGCGTGGTGTTGACCTCAGATTTGGCCTGTAATGCGTTTGTAGCACCTGTTACAACCTCACAGACCCTGATGTACCCTGCGCCTCGAAGCGAAGCATTCAGTGCAGTTCTGGAGCTTGTACCGTCACAGTACACATCGTCTCAGTATGTATCTCAAGACGTTACGACTCACATCCCCCGTTACATTGAGGGTGAGGCTCGTTTCATGCAGAGTGCGAGTGCTGCGAACATCGTACTAATGGCAACCACTGGCGACAACCGTCAGGTAATTGCTCATGAGTACCACTTCACAAGTCAAGGTAAAGTGCACCAAGCATGGCACAAATGGGTGTTCCCGTATCGTGTCGCTAGTCTACACTTTGCGCGTGACCGTGTTGTACTGTTTGCCGCAGACGATGCTGGTAGCACTGACAAAATCACTATCTCGACCATCGACCCTAAGCAGGGTGGTGTGACGTTTGATGTTGACCGCTTACCACACCTAGACTCGATGAGCATTGTGCCCGTCAATGATGGTAAAGGTATCGTGCCAATCTACATGCGTCCGTGGGTATCTGAGGGTAAGTTGACTGGTTCTGTTGCTACAGGTGCGTTAGCGTCTGAGGAAGTGGCTATTGATGTGGACGAGGTTTCATGGGAATTCACTGTAGAGCCGGGTTTCAAAGACTCGCAAATCTACTTAGGCTTCCGCTATGAATCACTGTTTGCACCAACGCCACCTATGCTGAAAGACCAGAACGATACTCTAATCAGTACTGCCCCGGTTCGACTGTTGCGTTATGAGTTAACAACTCGAAATACAGGTGAATTCGATGTACGCATCATTGACCCTACTATCGGGCTAGATTACTCAAACAGCAAAACCAGCCTAGTGTTCGGCACTGACGACGTTCAGTTGAACCAAGCTCTAGTGTCTGACTTGGCACGTGTCCCTGTACCGTGTCGAAGCAATGCGCAGTCCACTGAAATGTACTTGAGTACTGACGGTACACAGGATATGAACATTCTGGAAATTGAATATATCATTCGTTACAACCAACGCCGACGTCGCGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
42525841f7ed3fc7fa5d8ccff6fe2eee96211741b4094bf4a1f048d5e884d3fb
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2958
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50