Protein

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Genbank accession

GENB_60ba03314801 [GenBank]

Protein name

tail spike protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

Protein sequence

MQSYIGDRLEVPYGYDGAILPDGTKVIAVARSSTKNGTGIVVFKSTDGLTWETNFLSIPLNYPLAGVVIDPRDGRIMSIRQSGTSTTIYTYTSTDFGATWTERTVTHSVTPTYFVFNSMAWDRLNNRVLITNKSTNSNTTAFVMVLQSLDFGNTWSAAYTKPNNGVTGTCNLSQTDGGPYGVIARVTYSTASLSELICTVQGSLDFQVFVNPENMVYFAQTSSISRTSYNPINDLYLHHITHGVNANAYFSLFPSTLNLTIQTIPGLLSGEVTGAAAYSTASQGFVGTTRATAGGFVDQTLQRVIRSKYGNGGWFYEPTPLYNTSNIEVGFMLNDPTNNLLYTYNRGSIAEGNTIGYISTTTDMPAPSMTPTPSVSSAAKLDNDVVASGTFTSVNNITDYNRYALLANNGMDIKSVAMNFSTNAVVSGVLLVPNSNDVIIYGQFTTFAGTAVNGIIRADRSGTINTDFNYTSGINNAQIVMAVYDADYNVYFTTSNGRIVKMNMMGTVDSSWGGTLPLGGAMAVHYDPAINKLYVANSTRIYRVNIDGSLDNTFANITTNGVVYGFAVQPDGRLIATGAFTNITWNGTGFSRPYIARFNTDGSLDTTWYFAFASATQATYGGKALAVDDYGIYVSTSATNIDSTNRNYFIRLKFDGRVDLSFNAIVNSYVYTVSITEDKRILIGGAFTSVNGTARLYGARLFADGSLDTSFTPATLPNTGLRGLIDYDQPVLSLTPTPTPSVTPTPSQIPLKSSDNIALIGNGLVQVNGNTTTLTAMVVSNAGNANISNETVTPITGGPPYGICLTTDGTGDFFVFGAQNIAQSGHTNASILRVTNTGGFVSTFTSPETNVVSAMTPFTSGNYLFVSATNKIRKMNGNGVEDTGWGVGMPATTAYTMLAYDSVRGKIYAGSSNNTILCLNEDGTEDTTYSRPSYGAVSLYGMAVQPDGKLVISVSGSSANIRRYNTNGTPDSTFNVSTNGAANLSYGNNALAVTRDGIYIIGAFSTVNGVATPGITRLLLSNGAIDPSWIPMTGTNGQYYGIHVGEDQRPLISGSFTQVRGVARAGVARLMFDGSLDTTFVGVTKTNSGAIYAAKPLPSV

Physico‐chemical properties

protein length:	1100 AA
molecular weight:	117132,33260 Da
isoelectric point:	5,44503
aromaticity:	0,10273
hydropathy:	-0,04155

Domains

Domains [InterPro]

IPR036278
STR
15–177

IPR036278 SSF63829 SSF101898 IPR013431

G3DSA:2.120.10.10
STR
16–192

G3DSA:2.120.10.10 G3DSA:2.80.10.50 G3DSA:2.80.10.50 G3DSA:2.80.10.50 IPR013431 IPR013431

cd15482
ENZ
17–183

cd15482 IPR013431 IPR013431 IPR013431

IPR013431
RBD
569–607

IPR013431 IPR013431 IPR013431

GENB_60ba03314801

1 1100

Architecture

STR

RBD

STR

RBD

STR 15-192 | STR 424-721 | RBD 789-868 | STR 869-984 | RBD 985-1028 | RBD 1040-1080 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR036278	STR	IPR036278	15	177	Merged direct domain	Sialidase superfamily	Central	Low	Positional only	56 proteins / 56 hits
G3DSA:2.120.10.10	STR	G3DSA:2.120.10.10	16	192	Merged direct domain	G3DSA:2.120.10.10	Central	Low	Positional only	42 proteins / 42 hits
cd15482	ENZ	DC_0018	17	183	InterPro cluster	cd15482	Central	High	Text match	33 proteins / 44 hits
SSF63829	STR	SSF63829	424	685	Merged direct domain	SSF63829	Central	Low	Positional only	24 proteins / 24 hits
G3DSA:2.80.10.50	STR	G3DSA:2.80.10.50	493	614	Merged direct domain	G3DSA:2.80.10.50	Central	Low	Positional only	5 proteins / 5 hits
IPR013431	RBD	DC_0728	563	608	InterPro cluster	Delta-60 repeat	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR013431	RBD	DC_0728	569	607	InterPro cluster	Delta-60 repeat	C-terminal	Low	Positional only	2 proteins / 2 hits
G3DSA:2.80.10.50	STR	G3DSA:2.80.10.50	634	721	Merged direct domain	G3DSA:2.80.10.50	Central	Low	Positional only	5 proteins / 5 hits
IPR013431	RBD	DC_0728	669	711	InterPro cluster	Delta-60 repeat	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR013431	RBD	DC_0728	678	711	InterPro cluster	Delta-60 repeat	C-terminal	Low	Positional only	2 proteins / 2 hits
SSF101898	RBD	SSF101898	789	1004	Merged direct domain	SSF101898	C-terminal	Low	Positional only	15 proteins / 15 hits
G3DSA:2.80.10.50	STR	G3DSA:2.80.10.50	869	984	Merged direct domain	G3DSA:2.80.10.50	Central	Low	Positional only	5 proteins / 5 hits
IPR013431	RBD	DC_0728	939	976	InterPro cluster	Delta-60 repeat	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR013431	RBD	DC_0728	945	974	InterPro cluster	Delta-60 repeat	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR013431	RBD	DC_0728	996	1028	InterPro cluster	Delta-60 repeat	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR013431	RBD	DC_0728	1040	1080	InterPro cluster	Delta-60 repeat	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR013431	RBD	DC_0728	1051	1080	InterPro cluster	Delta-60 repeat	C-terminal	Low	Positional only	2 proteins / 2 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

GENB_60ba03314801

1 1100

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	10	10	0,0376
Central domain	11	1089	1080	0,9465
C-terminal	1090	1100	10	0,1987

Note: Constraints were applied during segmentation.
Sequence started with non-N-terminal domain|N-terminal too short, forced to 10 residues|C-terminal too short, adjusted boundary

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-10

Central
11-1089

C-terminal
1090-1100

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Stenotrophomonas phage CM1 [NCBI]	2998841	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	No host information

Coding sequence (CDS)

Genbank protein accession

OP883945.1_CDS_[96867..100169] [NCBI]

Genbank nucleotide accession

OP883945.1 [NCBI]

CDS location

range 96867 -> 100169
strand +

CDS

Genome Context

Tertiary structure

PDB ID

f3e259a8eb8505db6ec16e7d751bb8ad057b407b7ae6e82dc7e4c72a87dd80ac

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,2855

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence