Protein

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Genbank accession
YP_008770185.1 [GenBank]
Protein name
phosphodiesterase
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MIEPEVKLLMLKGDKGDGLSDDDMHKVESLIDSNVDEAKGSLSKSLSAQLEVARIDDMNQTKSFVTSSVVDAKEDINRTVNARIAGARFIPKVFANADDLKRAYPNGQDGIFVVADTGHMWLFVNGAWKDCGVYQTPVQKNQTFTFQPSKDGFPNYDTTTHVIDFRCITDSAQITLPNGDAYRIPYMAKVEVNWEFTTGVIIFDINTLSLISQSPYIPTNANQYVLASYRRYPAEGNRLTWNGVLAQSLLINGKTYMEQNVQFVPSKDGLPYYDSKRKIINFNCLTDQAYVSYQNRNYTLPKNATVALDFSSVTSLDVMIDMKTSELSAYAKYTVEDLTDKDIDKVSFATARRLNNGKVAIEGIKLLDEVSPKNSTGIIPIAHRGLNSIAPEESLEAYSLAVRSGYNDIECDIYFTEDGIPVLHHDATINNIARNSDGTELTQPVKIGERMLVELNAYDYGIYKSEIFKGLNICTFEDIIKFARRTGARVHAELKQHYTDEQCQVLLDIVSKYRMANKVGWQAFDHSSLDYIASHDENAQLELLAGNITDDLIADGKKRLNGKRKVVLSVGQGITQRLVDQAHSEGFDVYIWTVDDIDGAKKLINMGVDGIMTNGYIDLPNLLSNEYDL
Physico‐chemical
properties
protein length:629 AA
molecular weight: 70320,45170 Da
isoelectric point:5,00879
aromaticity:0,08903
hydropathy:-0,31208

Domains

Domains [InterPro]
DC_1932
STR
16–552
DC_1932
IPR017946
STR
370–623
IPR017946
PTHR46211
Unmapped
373–616
PTHR46211
IPR030395
ENZ
378–623
IPR030395
IPR017946
STR
380–614
IPR017946
cd08556
ENZ
381–614
cd08556
IPR030395
ENZ
383–614
IPR030395
PS50007
ENZ
387–429
PS50007
YP_008770185.1
1 629
Architecture
STR
STR 16-623 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008770185.1
1 629
Domain Start End Length (AA) Confidence
N-terminal 1 372 372 0,9247
Central domain 373 618 247 0,7051
C-terminal 619 629 10 0,1439
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-372
Central
373-618
C-terminal
619-629

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage phiLdb
[NCBI] 		1399942 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactobacillus delbrueckii ATCC 11842
[NCBI] 		1585 Bacillota > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus > Lactobacillus delbrueckii

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008770185.1 [NCBI]
Genbank nucleotide accession
NC_022762 [NCBI]
CDS location
range 14368 -> 16257
strand +
CDS
ATGATCGAACCAGAAGTTAAACTTTTGATGTTGAAGGGCGACAAAGGCGATGGCCTTTCAGACGATGACATGCACAAGGTGGAGTCGCTGATTGACTCCAATGTTGACGAGGCAAAAGGAAGCCTTAGCAAATCATTAAGCGCACAGCTTGAAGTTGCGAGAATTGACGACATGAACCAAACAAAGTCGTTTGTCACTTCCAGCGTGGTTGATGCAAAGGAGGACATTAACAGAACAGTAAATGCGAGAATTGCGGGTGCAAGATTTATCCCGAAGGTATTTGCTAATGCTGACGATCTGAAAAGGGCGTACCCTAATGGGCAAGATGGAATTTTCGTTGTAGCGGATACCGGGCACATGTGGTTATTCGTCAACGGTGCTTGGAAAGATTGTGGAGTATATCAAACGCCGGTTCAAAAAAATCAGACGTTTACGTTCCAGCCTTCTAAGGACGGCTTCCCGAATTATGATACGACAACGCACGTGATCGACTTTAGATGTATTACAGACAGCGCACAGATCACGCTTCCAAACGGTGATGCTTACAGAATTCCATATATGGCCAAGGTGGAGGTAAACTGGGAATTTACCACGGGTGTCATTATCTTTGACATCAACACCTTATCCCTCATTTCACAATCGCCGTATATTCCAACCAACGCAAATCAGTACGTCTTGGCCAGCTACAGAAGATACCCCGCTGAAGGAAACCGTCTTACTTGGAACGGCGTTTTAGCGCAAAGTCTGCTGATTAATGGGAAGACCTACATGGAACAGAACGTTCAGTTCGTTCCATCAAAAGACGGTTTACCATACTACGATAGCAAGCGGAAGATCATTAACTTTAATTGCCTTACCGACCAAGCATACGTCTCTTACCAAAATCGCAATTACACGTTACCAAAAAATGCTACAGTTGCTCTTGATTTCTCTAGTGTAACGTCCCTCGATGTGATGATAGACATGAAGACAAGTGAACTGAGTGCTTATGCAAAGTACACTGTCGAAGATCTTACAGATAAAGATATTGACAAGGTTTCATTTGCCACAGCTAGACGTTTGAACAACGGCAAAGTTGCGATCGAAGGCATTAAATTACTAGATGAGGTTAGCCCGAAGAATAGCACCGGGATTATTCCAATCGCACACCGTGGGCTTAATTCAATCGCTCCAGAGGAGAGTTTGGAGGCCTATTCTTTGGCTGTAAGAAGCGGCTACAACGATATTGAGTGCGACATTTACTTTACGGAAGACGGCATTCCCGTTTTGCACCATGACGCTACCATCAACAATATTGCCCGCAATTCAGATGGTACAGAGTTGACGCAACCGGTAAAAATTGGCGAACGAATGTTAGTAGAATTAAACGCCTACGACTACGGGATTTACAAGTCTGAGATCTTCAAAGGCCTTAATATTTGCACATTTGAAGACATCATCAAGTTTGCTCGTAGAACCGGGGCAAGAGTTCATGCTGAGTTGAAGCAACACTATACCGATGAACAATGCCAAGTACTTTTAGACATCGTTTCTAAGTATAGAATGGCTAACAAGGTTGGGTGGCAAGCGTTTGATCATTCCAGCTTGGATTATATTGCTAGTCATGACGAAAATGCACAGTTGGAGTTGTTAGCTGGGAACATTACCGATGACTTAATTGCTGACGGCAAAAAGCGGCTCAATGGCAAGAGAAAAGTCGTTCTTAGCGTAGGGCAAGGCATAACGCAACGATTAGTAGACCAAGCTCATTCAGAAGGGTTTGATGTTTACATTTGGACTGTTGACGACATTGATGGAGCTAAAAAGTTGATAAACATGGGCGTAGACGGGATCATGACCAACGGCTATATTGATCTTCCAAATCTTCTGAGTAACGAATACGACTTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b3ac278609dd9526fbfb964470126cd96b00bc7365e8bf7f46ce568e62de2fd7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7894
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50