Protein

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Genbank accession
XVB93811.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTLPTQNAVPSSAKNDQLFNAEKIDQVVNSDDLQYTDRFGKKRFTFSGLYNVIQTWFTGLGGSTGASGIGIKQGGTIQDSLYFATPEMFGAKGDGVTDDTASFKNMFLSGYLHYVAGKNYVISDNVSIPANVTLVIKGQITQRSNGTFTWGGSNRVSGFPMFSITSPNVRIEGNGVLVNQFEAFKIDTGGDNLILDGITINNPERSSSVGISLYNVSNTTINNCFISNNGKAGTYDSVNSKQIYGYGNGIDFGATTGTKITNCYFYNNGQCGAWCYGAGNVIFTNNVCFRNYQSGFQYGPHASFNGVVIANNVFAVNGADGIDINNTGSSTISIRATITGNVSVLNGYFEGDTSKPTQDGSGIATLRFISGVTCTGNYSIDCAGVGIYLTSFANATIADNIIINTMTNSSGIYMGNSGSDVVVHDNIISTKGTCFQVGGSTPLTRLKFHDNILISSSGTSVSLPSNTYTDVSWHDNHHSSFQTINFWFGVQDEKIRYQGTTGNGVYISASFSNFSLNVGGSTTGSLVFVDGGSKNRFTGVNVNNTGSGIGLTLNNAVRPTFISPFVQCATGTGLSVVGGSNTSIYDATISGQTAVSANTSIMYTGTKSLSGATSYVIKPFNAQYVQET
Physico‐chemical
properties
protein length:628 AA
molecular weight: 66436,67670 Da
isoelectric point:5,97454
aromaticity:0,10828
hydropathy:-0,10096

Domains

Domains [InterPro]
DC_1559
ATT
1–239
DC_1559 IPR006626 IPR006626 IPR012334 IPR006626
IPR011050
STR
83–346
IPR011050 IPR007742
IPR012334
STR
87–294
IPR012334 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
IPR006626
Unmapped
166–188
IPR006626 IPR006626 IPR006626 IPR011050
IPR039448
ENZ
210–342
IPR039448
XVB93811.1
1 628
Architecture
ATT
STR
ATT 1-239 | STR 240-544 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XVB93811.1
1 628
Domain Start End Length (AA) Confidence
N-terminal 1 99 99 0,9896
Central domain 100 606 508 0,9927
C-terminal 607 628 21 0,6217
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-99
Central
100-606
C-terminal
607-628

Taxonomy

  Name Taxonomy ID Lineage
Phage Raoultella phage VB_ZK_P1
[NCBI] 		3425683 Viruses > unclassified bacterial viruses >
Host Raoultella ornithinolytica
[NCBI] 		54291 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XVB93811.1 [NCBI]
Genbank nucleotide accession
PV662128.1 [NCBI]
CDS location
range 138107 -> 139993
strand +
CDS
ATGACACTCCCAACACAAAACGCCGTTCCTAGTTCAGCTAAGAACGACCAGCTCTTTAATGCTGAGAAGATAGACCAGGTCGTTAATAGCGACGACCTTCAATATACCGACCGCTTCGGTAAGAAGCGATTTACTTTCTCTGGTTTATATAACGTCATCCAGACTTGGTTTACTGGATTGGGTGGATCTACTGGGGCCTCAGGCATTGGGATAAAACAAGGTGGGACTATTCAGGATAGCCTATATTTCGCCACCCCTGAAATGTTTGGAGCAAAAGGTGATGGGGTAACTGATGATACCGCCTCGTTTAAAAATATGTTTTTATCGGGCTATCTTCATTATGTCGCCGGCAAAAATTATGTTATTTCAGATAACGTCTCTATCCCAGCCAATGTCACTTTGGTGATTAAAGGCCAGATTACCCAAAGGAGTAACGGCACTTTTACTTGGGGTGGTTCTAACCGAGTATCCGGATTCCCTATGTTTTCCATTACTTCCCCTAATGTAAGGATAGAGGGTAATGGAGTGCTCGTCAATCAGTTTGAGGCATTCAAAATAGACACCGGTGGAGATAATCTTATTCTTGATGGGATCACAATTAATAATCCAGAGAGATCTTCTTCGGTAGGGATATCGCTCTATAACGTCTCTAACACTACAATTAATAATTGTTTTATCTCTAATAATGGTAAAGCCGGGACCTATGATTCGGTTAATTCTAAGCAAATTTATGGTTACGGGAACGGAATTGATTTCGGAGCTACGACGGGAACCAAGATAACCAATTGTTATTTTTATAATAATGGTCAGTGTGGGGCGTGGTGTTATGGCGCCGGGAATGTTATTTTTACTAATAATGTCTGCTTTAGAAATTACCAATCCGGGTTCCAGTATGGCCCGCACGCCAGTTTCAATGGAGTGGTAATCGCCAATAATGTGTTTGCAGTTAATGGGGCAGATGGAATTGACATCAACAATACAGGATCGTCGACGATCAGTATTAGGGCGACGATAACAGGTAATGTAAGCGTTCTTAACGGGTATTTCGAAGGAGATACCTCTAAACCAACCCAGGATGGATCTGGGATAGCCACACTACGATTTATTTCAGGTGTGACATGCACGGGGAATTACAGTATCGACTGTGCTGGGGTGGGGATATACCTGACGTCATTTGCTAACGCCACAATCGCCGATAACATTATTATTAACACAATGACCAATTCTTCTGGCATTTATATGGGAAATTCTGGATCGGATGTCGTCGTGCATGATAATATTATTTCTACTAAAGGAACGTGTTTCCAAGTAGGTGGATCCACACCATTAACGCGATTAAAATTTCATGATAATATACTGATAAGTTCCTCGGGCACATCGGTTTCTTTACCATCTAATACGTATACCGATGTAAGCTGGCATGACAACCATCATTCTTCCTTCCAAACTATTAATTTCTGGTTTGGGGTTCAGGACGAAAAAATCAGATATCAGGGGACAACAGGTAATGGTGTGTATATCAGCGCTTCGTTTTCTAATTTTAGTCTCAATGTGGGGGGATCCACGACAGGTTCCCTGGTGTTTGTGGACGGCGGATCTAAAAATAGGTTTACTGGTGTTAATGTAAACAACACTGGGTCTGGGATTGGTTTAACTTTGAACAACGCCGTGAGACCTACGTTTATAAGTCCGTTTGTTCAATGTGCCACTGGAACAGGGCTATCGGTTGTTGGCGGATCCAACACAAGTATTTACGACGCAACGATTAGTGGGCAAACCGCCGTATCCGCCAACACTTCGATAATGTACACCGGGACCAAATCTTTATCTGGAGCTACTTCATATGTTATTAAGCCCTTTAATGCACAGTACGTGCAAGAAACTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f37e8e25380aea7576f7e3c03e20f8d36d16972b65016be81007f8ac44c1d746
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9183
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and identification of R. ornithinolytica phage and its targeted bacteriostatic effect on chilled pigeon meat Feng,S., Zhong,L., Zhou,J., Huang,Y., Sun,Y., Yuan,D. and Liang,W. 2025 — GenBank