Protein

View in Explore
Genbank accession
YP_010682057.1 [GenBank]
Protein name
phosphodiesterase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MQQTEAEGRLNLYDDVTPLEKTKNINVLTAAIRKKTRGADVREAIATSIETTYADSIANGNTNMEVAKARGTYNTLGDRLENFNTEIRNIVSCSPKGIYANLSELQSAKPNGDSGIYLTTDNGHWYYYANGWKDGGMYQAAGIADGSVKFSSIDKKDFNVQFDPKLKVVYKPNLNSWMNADNPTENATKIYMIPFRGAGKVTVSFYGSLFPGVKSQIKLVKKATNSSNYCVSLNEKTITETTEGGYTTITFNHPVPKGEYFIAFCGINFRWNFGYSYWLESSSGYNQSIFLQRKTENRCIDAVIACDFSVDSSGEKLLDENMHFDSGIFSSHTEPILYIPNYELPIGTKSIILGTKNNTPVFIFRKNENNTFEKIKQIYTEEIGEGARYRKYFLDIVAEKDMYVGVFGNVYYDTSGDVSAKKGHFEKDISASDSENIGSMYFNPNTNIHMVPILYYDENLINVAQKNANSFEEINGSLIDITNKINKINKKTITLTNIIRKMKRGNAVTISLYGDSTYYGHKSGAVPLGTRTSEPVSESLQKYLRAYFLNENITVNNYATNGRQAQQDSDDWDTKMANDKADVIFINFGINDSNSGKTAETFYSQMETLVQGALKTNKAVILETANQVLTFDKGSQGMGDYTKAFNIKEFVDVTRQLVKSYNIYLLDGYKRSLSYINEFFNPTIALPDGMHPSDDMYKYKAVQMMSMFTNTSFSKLKSGQTLSILEANFNTTTPNSVADSSSKFGFKYTVKDISVSFGLEKQSDIKIYIKSTASMKVYVNGLDTQYISSDGYIVIKNIHSNDVFIQITSDEATDVYGLEVV
Physico‐chemical
properties
protein length:821 AA
molecular weight: 92025,21870 Da
isoelectric point:6,00160
aromaticity:0,11571
hydropathy:-0,42460

Domains

Domains [InterPro]
IPR051532
468–697
IPR051532
IPR036514
508–719
IPR036514
SSF52266
508–707
SSF52266
cd00229
510–706
cd00229
IPR013830
513–698
IPR013830
YP_010682057.1
1 821
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage SW24
[NCBI] 		2483877 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010682057.1 [NCBI]
Genbank nucleotide accession
NC_071055 [NCBI]
CDS location
range 16364 -> 18829
strand +
CDS
ATGCAACAAACAGAAGCAGAGGGACGTTTGAACCTCTACGATGATGTGACGCCGTTGGAAAAAACCAAAAACATTAATGTTTTGACAGCGGCTATCAGAAAAAAAACAAGAGGGGCAGATGTCCGTGAAGCCATCGCTACGTCTATTGAAACGACTTACGCAGATAGTATCGCTAACGGAAATACCAACATGGAAGTCGCTAAGGCAAGAGGAACATATAATACTCTAGGAGATAGACTTGAAAATTTTAATACTGAAATCAGGAATATTGTAAGTTGTTCACCAAAAGGAATATATGCTAATCTATCAGAGCTACAATCGGCTAAGCCGAACGGAGATTCCGGAATCTATCTCACAACAGACAACGGCCATTGGTACTATTATGCTAACGGTTGGAAAGATGGTGGCATGTATCAGGCGGCGGGGATTGCTGATGGAAGCGTGAAGTTTTCTTCAATCGATAAAAAAGATTTTAACGTTCAGTTTGACCCGAAATTGAAAGTCGTATATAAGCCAAATTTAAATTCTTGGATGAATGCAGATAATCCCACCGAGAACGCCACAAAAATTTATATGATTCCATTTAGAGGCGCAGGCAAAGTGACCGTTAGTTTTTATGGATCCCTGTTTCCTGGCGTAAAATCGCAAATAAAGTTAGTCAAAAAGGCTACTAATTCAAGTAATTATTGTGTGTCTCTCAATGAAAAAACCATAACTGAAACGACAGAAGGCGGATATACAACAATTACGTTCAATCATCCAGTTCCTAAAGGCGAATATTTTATCGCTTTTTGTGGAATTAATTTCAGATGGAATTTTGGATATAGTTATTGGTTAGAAAGCTCTTCAGGTTACAATCAGTCGATTTTTTTACAAAGAAAGACAGAAAATAGATGCATAGATGCTGTTATTGCTTGTGATTTTTCTGTTGATTCTAGCGGTGAGAAATTATTAGACGAAAATATGCACTTTGATTCAGGTATATTTTCGTCTCACACTGAACCTATTTTATATATTCCTAATTACGAATTGCCTATCGGAACAAAATCTATAATTCTTGGGACTAAAAACAATACACCTGTTTTCATTTTTAGAAAAAATGAAAATAATACGTTTGAAAAAATAAAACAAATATACACAGAAGAAATAGGTGAAGGAGCACGTTATAGAAAATACTTTTTAGACATTGTTGCTGAAAAAGATATGTATGTCGGAGTTTTTGGAAATGTTTATTATGATACTTCTGGTGATGTTTCTGCAAAGAAAGGACATTTCGAAAAAGATATTTCGGCTTCAGATTCTGAAAATATAGGGTCAATGTATTTCAATCCAAATACAAATATTCACATGGTTCCTATTTTATATTATGATGAAAATTTAATTAATGTTGCACAAAAAAATGCGAATTCATTTGAGGAAATAAATGGATCGCTAATTGATATCACCAATAAAATAAATAAAATAAATAAAAAAACAATAACATTAACAAACATAATCAGAAAAATGAAAAGAGGGAATGCAGTCACTATTTCGCTTTACGGAGACTCAACGTACTATGGTCATAAGTCAGGCGCTGTCCCTTTAGGCACTAGAACAAGCGAGCCTGTTTCTGAAAGTTTGCAAAAATATCTACGTGCTTATTTTTTGAACGAAAATATAACAGTAAACAACTATGCAACTAACGGAAGACAAGCACAACAAGATTCAGATGATTGGGACACAAAAATGGCTAATGACAAAGCGGACGTTATTTTTATAAATTTCGGGATAAACGATTCAAATTCCGGTAAAACAGCAGAAACTTTTTACAGTCAAATGGAAACTTTAGTACAAGGTGCGCTGAAAACGAACAAAGCAGTCATCTTAGAAACTGCTAATCAAGTCTTAACTTTTGACAAAGGAAGTCAAGGGATGGGAGACTATACGAAAGCTTTTAACATTAAAGAATTTGTTGATGTAACAAGACAGTTAGTTAAGAGTTATAATATTTATTTGCTTGATGGATATAAACGTTCATTAAGCTACATTAACGAATTTTTTAATCCCACAATAGCTTTGCCGGACGGCATGCATCCGTCAGACGATATGTATAAGTATAAAGCTGTTCAAATGATGTCTATGTTTACTAATACGAGTTTTTCAAAATTAAAATCAGGACAGACATTATCTATTTTAGAAGCTAATTTTAATACAACAACACCAAATTCAGTAGCGGATAGCAGTTCTAAATTCGGTTTTAAATATACGGTTAAAGACATCTCGGTATCATTTGGACTAGAAAAACAATCAGATATTAAAATTTATATCAAAAGCACAGCATCAATGAAAGTTTATGTTAATGGTTTAGATACTCAATATATTAGCTCTGATGGATATATCGTAATAAAAAATATTCACTCTAACGATGTATTCATTCAGATCACTTCAGACGAAGCGACAGATGTTTATGGTTTAGAAGTGGTTTAA

Tertiary structure

PDB ID
305fab421d88fbf5ff4661a57423b808ac03408b0c0636c09fff0cdbc193fe0f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7068
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biodiversity of Streptococcus thermophilus Phages in Global Dairy Fermentations Lavelle,K., Martinez,I., Neve,H., Lugli,G., Franz,C., Ventura,M., Bello,F., Sinderen,D. and Mahony,J. 2018 — GenBank