Protein

View in Explore
Genbank accession
YP_009221628.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence Phold
Probability 1,00
Protein sequence
MKNYEIKNHTIEVDFSNYRINKRLLDYFIYNENDVKTAYIEAILKNKDEIIDLSEYDRVLVSITKSDGQKVNGECEVVDAENGIVEIELSRQALASVGINTFQLSLVKDGTLLNTTNLYYRVEEGMINDDDITSTDEYGVLLVIIAQAEEIIKNNKELTKRVEQLEITILGNEEVRDKAEQIRIYNEDIRNIQEEEREFNELTRQNQEANREESIQNMQIQVDDKLTDCQLQLDEMIDAKSKEIDNIVDDKMLDVQVQTDNKFQDLDTRANNTFDLYDKTFEDKLTDNQEQIDYKLDEVNQAISNVEDCIDESTTKLDTKIKEVDDKIVEVNTAKTDMTTTVSNKITEFENRFEELESLDARGELIQARESVDGTVKDTLKDRLTYDFEKVNEKIAEMTSAATNVAFSKSYVESDWVADGEYFKLIVNHNLVTENIFVAILDEATKKSMTNSYTTVDSNTIEIFNESNIDVKVTVVNGNTNKEVIQATINDNITTLDSTYSSIKIDAKFDESLTKINENKSNIATNLEKINLIQSKVGSSELSTVSKNISDAVNELDASVKVLESGGNTNEQLKILKENYNKMSVEILKILFELELDKEATADEAGYWYDTLYDSKNISNLDGLKLNKFKQQLELLSNSGTVLFKNVTVPFLCNKIRYIHDLGSNYSETKTEESYQKGDTEIKINKYSYEVR
Physico‐chemical
properties
protein length:692 AA
molecular weight: 79188,07610 Da
isoelectric point:4,44557
aromaticity:0,06792
hydropathy:-0,59913

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
6–128
G3DSA:2.60.40.3350 Coil Coil
YP_009221628.1
1 692
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage phiCD211
[NCBI] 		1582152 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009221628.1 [NCBI]
Genbank nucleotide accession
NC_029048.2 [NCBI]
CDS location
range 41209 -> 43287
strand +
CDS
TTGAAAAATTATGAAATAAAGAATCATACCATAGAGGTCGACTTTAGTAATTATAGAATAAACAAAAGATTGCTAGATTATTTTATTTATAATGAAAATGATGTTAAAACAGCTTATATTGAAGCTATATTGAAAAATAAAGATGAAATAATAGATTTATCTGAATATGATAGAGTTTTAGTTAGCATTACAAAAAGTGATGGACAAAAGGTTAATGGTGAATGTGAAGTTGTAGATGCAGAAAATGGTATTGTAGAGATAGAACTTAGCCGACAAGCACTTGCTTCTGTTGGTATAAATACATTTCAACTATCCCTTGTGAAAGATGGAACTTTACTCAATACTACAAATCTTTATTATAGAGTTGAAGAGGGTATGATTAATGATGATGATATCACCTCAACTGATGAATATGGAGTATTATTGGTAATAATAGCCCAAGCAGAAGAGATTATAAAAAATAATAAAGAGTTGACTAAAAGAGTTGAACAGCTTGAAATAACTATACTTGGAAATGAAGAAGTTAGGGATAAAGCAGAGCAGATTAGGATTTATAATGAAGATATAAGAAACATACAAGAAGAAGAAAGAGAGTTTAATGAGTTAACACGTCAAAATCAAGAGGCAAATCGTGAAGAATCCATTCAGAATATGCAAATTCAAGTTGATGATAAACTTACAGATTGCCAACTCCAATTAGATGAAATGATAGATGCTAAGTCTAAAGAAATAGATAATATAGTCGATGATAAAATGCTTGATGTTCAAGTTCAGACAGACAATAAGTTTCAAGACTTAGACACTAGAGCTAATAATACTTTTGATTTGTATGATAAGACATTTGAAGATAAACTTACAGATAACCAAGAGCAAATTGATTACAAACTTGATGAAGTAAATCAAGCTATATCTAATGTAGAAGATTGTATTGATGAAAGTACTACAAAATTAGATACAAAGATAAAAGAAGTAGATGACAAAATAGTTGAAGTAAATACTGCTAAAACTGATATGACAACAACTGTTAGTAATAAAATAACTGAATTTGAAAATAGGTTTGAAGAATTAGAAAGTCTTGATGCTAGAGGCGAATTAATACAAGCTAGAGAAAGTGTTGATGGAACTGTAAAGGATACTTTAAAGGATAGATTAACATATGACTTTGAGAAAGTTAACGAGAAAATAGCAGAAATGACTTCTGCTGCAACTAATGTAGCTTTTAGTAAATCTTATGTTGAATCGGATTGGGTTGCTGATGGAGAATATTTTAAACTTATAGTTAATCATAATTTAGTTACAGAAAATATATTTGTAGCAATATTAGATGAAGCAACTAAGAAAAGTATGACTAATTCTTATACTACAGTAGATTCTAATACGATAGAAATATTTAATGAAAGTAACATAGATGTAAAAGTAACTGTTGTAAATGGTAATACAAATAAAGAAGTTATACAAGCTACAATAAATGATAATATAACAACACTAGATAGTACTTACTCTAGTATTAAAATTGATGCAAAATTTGATGAGAGTCTAACTAAGATAAATGAAAATAAAAGTAATATAGCTACTAACTTAGAGAAAATAAATCTAATACAAAGTAAAGTTGGTTCGAGTGAATTAAGTACAGTATCTAAAAATATATCAGATGCGGTAAATGAATTAGATGCTAGTGTTAAAGTTCTTGAATCTGGTGGAAATACAAACGAGCAATTGAAAATATTAAAAGAAAATTATAATAAAATGTCTGTGGAAATACTTAAAATTCTATTTGAATTAGAATTAGATAAGGAAGCTACAGCAGATGAAGCTGGGTATTGGTATGATACCCTATATGATTCTAAAAACATAAGTAATTTAGATGGTTTAAAGCTTAATAAATTTAAGCAACAATTAGAGTTACTTTCAAATAGTGGAACTGTATTATTTAAAAATGTAACAGTTCCTTTTTTATGCAACAAAATAAGATATATTCATGATTTAGGAAGCAACTATAGTGAAACTAAAACAGAAGAATCTTATCAAAAAGGTGATACTGAAATAAAAATAAACAAGTATTCCTACGAAGTGAGATAG

Tertiary structure

PDB ID
257c5f594843628f50eedd16f0d6d27cd19b365ac32f1715e2c79e57fcce30cf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6551
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
High prevalence and genetic diversity of large phiCD211-like prophages in Clostridium difficile Garneau,J.R., Sekulovic,O., Dupuy,B., Soutourina,O., Monot,M. and Fortier,L.C. 2018-02 — GenBank