Protein

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Genbank accession
YP_010669015.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MFSNAPKATSNDGGVVPGNKPSIGNNDARKVVHYIEQIFDPDIHPIELMSKYIVPEEGELVVDMPNHVFYEVEHVDRHATWKTTLGPWNPIPEASGNDYTLFPKHEYGFLQGEMALMIDYSVRPPVARVDANCVAPNAAYAHLYNGDVFQDTDIISATYSGVDFIDNKIPVSPVVLDNFENLTIMGANTFSVQRSDKELPNGSRCSLIFKDQAGRPIPPIYPLAVQHCSHLRDHELGTRYVKSIELISPWFTNTSNPKTLFIRINVLLKTVEFRARVHYSDGTSSDPVPVNTFNGNNGFKLLGLDQWKPTVPGQSSDSLVLTYAFAEHEQAYMAQPGQPRHMSEKYTIVAVPGEGTYTPRIYSYPYWDNMNGWKLKHFLTDLDRKYCRDVTDIVTLNESSPAFDGRKYGEEQNLIFNLNMRDVSASYEPWSFMQHTSPTLYNDATAEGRKWDVRHSRGKPPFVSMTVEYIAQAGGGVKAKFAGIANDKEFLDKGYWAFDPLMDPLTEIKAPTPTHFDLVRVNGSVRTGIPIAGWKELPIDAFSLTPGEGLFIRWVRRESDGNEFQLGVSAAVSKKVSVFS
Physico‐chemical
properties
protein length:580 AA
molecular weight: 65076,61020 Da
isoelectric point:5,67147
aromaticity:0,11207
hydropathy:-0,37638

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage D6
[NCBI] 		2593322 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010669015.1 [NCBI]
Genbank nucleotide accession
NC_070958 [NCBI]
CDS location
range 258089 -> 259831
strand +
CDS
ATGTTTAGTAACGCACCTAAAGCCACCAGTAATGACGGTGGTGTCGTTCCGGGTAACAAACCCAGCATCGGTAATAATGACGCTCGCAAGGTCGTCCATTATATCGAGCAAATTTTCGATCCCGATATTCACCCCATCGAGCTGATGTCCAAGTACATCGTTCCTGAAGAGGGTGAACTCGTAGTAGACATGCCGAACCATGTTTTCTACGAGGTAGAACATGTGGATCGTCACGCCACTTGGAAAACGACCCTTGGTCCTTGGAACCCGATTCCCGAGGCCAGTGGTAATGACTACACCCTGTTCCCGAAACACGAATACGGTTTCTTGCAGGGTGAAATGGCACTGATGATCGATTACAGTGTCCGTCCTCCTGTGGCTCGGGTCGATGCAAACTGCGTCGCTCCTAATGCAGCATACGCTCATCTCTATAACGGTGATGTGTTCCAGGATACTGACATTATTTCAGCCACTTATTCTGGTGTTGATTTTATCGACAACAAAATCCCGGTATCCCCGGTTGTTCTCGATAACTTCGAAAACCTCACCATTATGGGTGCGAATACGTTCTCTGTCCAACGAAGTGATAAGGAACTCCCTAACGGTTCACGGTGTAGCCTGATCTTCAAGGATCAAGCGGGTCGACCGATCCCACCCATCTATCCGTTGGCTGTTCAGCACTGCTCTCATCTCCGTGACCATGAGCTGGGTACTCGCTACGTTAAGAGCATTGAACTCATCTCTCCATGGTTCACCAATACGTCCAATCCGAAGACCCTGTTTATCAGGATCAACGTATTGCTGAAGACGGTTGAGTTCCGTGCACGAGTTCACTACTCCGACGGTACTTCTTCTGATCCGGTTCCTGTGAATACCTTCAACGGTAATAACGGGTTCAAACTCTTGGGTCTGGACCAGTGGAAACCGACAGTACCTGGTCAGTCTTCTGACAGTCTGGTTCTGACGTATGCATTCGCTGAACACGAACAGGCTTACATGGCCCAACCTGGTCAGCCTCGTCATATGTCCGAGAAGTACACCATCGTTGCTGTCCCTGGTGAGGGTACGTACACTCCGCGTATCTACTCCTACCCGTATTGGGATAACATGAACGGTTGGAAGTTGAAACACTTCCTGACTGACCTGGATCGCAAGTACTGTCGTGACGTCACTGACATTGTCACACTGAACGAATCCAGTCCTGCGTTTGATGGCCGTAAGTATGGTGAAGAGCAGAACCTGATCTTCAACCTGAACATGCGTGATGTCTCCGCTAGCTATGAACCCTGGTCGTTCATGCAACACACCTCTCCAACGTTGTACAACGATGCAACAGCGGAAGGACGTAAGTGGGATGTTCGTCATTCTCGTGGTAAACCGCCATTCGTGTCGATGACTGTCGAGTACATTGCTCAAGCTGGTGGTGGTGTTAAGGCCAAGTTCGCCGGGATTGCCAATGACAAAGAGTTCCTTGATAAAGGTTACTGGGCATTCGATCCTCTTATGGATCCGCTCACTGAAATCAAGGCTCCGACTCCGACCCACTTCGATCTCGTTCGGGTCAATGGTTCTGTTCGGACCGGTATTCCTATTGCTGGCTGGAAAGAACTTCCCATCGATGCGTTCAGTCTCACTCCGGGTGAAGGTCTCTTCATTCGTTGGGTACGTCGTGAATCCGATGGCAATGAATTCCAACTCGGTGTTTCTGCTGCTGTCAGTAAGAAAGTCTCTGTGTTCTCATAA

Tertiary structure

PDB ID
ed3c0a1a8d6bde956f792b57d3d5ca10e40fec80d1f8f2b2b54555b2a6bb4418
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3863
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Aeromonas hydrophila bacteriophage D6 Rai,S., Tyagi,A., Kumar,N. and Singh,N. 2020-06-10 — GenBank