Protein

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Genbank accession
AGG54250.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,84
TF
Evidence Phold
Probability 1,00
Protein sequence
MSQLNVGKVNVTGDGVQYPQYTNSNRPSGTTGLVIYNTSESKLQVYTGSEWESVGADEDTGPGTGGIQISRGNRSQRPNSDSPWNRESLLRYNTENTTLESYFNVSQSGSGGRDGWYAVGGKQMVYHMSARTGAWNSWDARWGTTYQAADYYQYKFYITTADPNGADRFWLRYWRADNNISTNGYYFSGEWWHSNDGGSRQNSQNNSYWPITVVNNNSYRMAPTGEGGYQGEIFMSNTPNNNNMNFWNMYCNYNYWSQQECGTGWQGCQWTGPTQSGTGYPISGFRIGHQDGNSVRASNNGTNTIISVFGVAGSEAKEWSGSW
Physico‐chemical
properties
protein length:323 AA
molecular weight: 36154,40920 Da
isoelectric point:5,43781
aromaticity:0,14861
hydropathy:-0,92693

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SSM4
[NCBI] 		536466 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. WH 8018
[NCBI] 		166322 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGG54250.1 [NCBI]
Genbank nucleotide accession
HQ316583 [NCBI]
CDS location
range 156120 -> 157091
strand +
CDS
ATGTCCCAACTAAACGTAGGAAAGGTTAACGTCACTGGAGATGGCGTACAATATCCTCAATATACAAACAGTAATCGTCCGTCAGGAACTACTGGACTAGTAATCTACAATACTAGTGAAAGCAAACTCCAAGTTTACACAGGTTCTGAGTGGGAATCTGTTGGTGCTGATGAAGATACTGGTCCTGGTACTGGTGGTATCCAGATCTCTAGGGGTAACAGATCTCAGAGACCTAACTCCGACTCTCCATGGAACAGAGAATCATTACTTAGATACAACACTGAGAACACAACTCTGGAATCGTACTTCAACGTTTCTCAGTCTGGTTCTGGTGGTCGTGATGGTTGGTATGCAGTTGGTGGTAAGCAAATGGTCTACCACATGTCTGCAAGGACTGGTGCTTGGAACTCTTGGGACGCTAGATGGGGTACTACATATCAGGCTGCTGACTACTATCAATATAAGTTTTACATTACTACTGCTGACCCGAATGGTGCTGACCGTTTCTGGTTGAGATACTGGAGAGCAGACAACAACATTTCTACCAACGGTTACTACTTCTCTGGAGAATGGTGGCACTCCAATGACGGTGGATCTAGACAGAACTCACAGAATAACTCTTACTGGCCTATTACAGTTGTTAACAACAACTCCTACCGTATGGCACCTACTGGTGAAGGTGGTTATCAGGGTGAGATCTTTATGTCTAACACCCCTAACAACAATAACATGAACTTCTGGAACATGTATTGTAACTACAACTACTGGTCACAGCAGGAATGTGGTACTGGTTGGCAGGGTTGTCAGTGGACTGGTCCTACTCAGTCTGGTACTGGTTATCCGATCTCTGGTTTCAGAATCGGTCACCAAGATGGTAACAGTGTTCGTGCATCTAACAATGGTACTAACACAATCATCTCGGTCTTCGGTGTTGCTGGATCCGAAGCAAAAGAATGGTCTGGTTCTTGGTAA

Tertiary structure

PDB ID
d4edc01fa35dacf06e6512529831f0632d13cd9a12456e53e3f58e7ffe54d589
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5862
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage S-SSM4 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank