Protein

View in Explore
Genbank accession
QPL22303.1 [GenBank]
Protein name
neck passage structure
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MSLDNFRNRAIVWDTVNKDFPQPIQIMQGDVNARTLSVKIIDNGGEIDLTGHSLKLTYQYTNSSNSGFVMIPPENLTKGEFLLVIPTEMTKAGVIEANLILLNEDKEQVIVSKNLTFISDNSTVTDLAQEVNNKIDDFTKLLLENMPQVMRSELNDLHAQTESNTSNIELKANQTDLNNLQTIVNNQGITISTAAQETEVRSLISLLDNVKQTKKVARINLLLEQYKTSGYYRQYTNGEKLVNTDYDLFDMVPVNADTDYFTGISPNAHIAFYDFEQKYISGLLKPQPNFAIPSSYLNTLVVKVPTNAKYMSYACKKNATQSVFYENYNPILDTSQSIFEGLLPFEQIANHPRGLKKVSNQNMFNKKIVVSGRYLDSANGGLPHNANYNVYFMKVKPNTNYTTSGFVNNHDAFYDISGKFISSGNKSGTITTPANAFFWGISLTNTELPGAVICEGNVAKYSDFGTGAIFEVVDTAPQTLNVGADKKFTTIQAAVNFAKDGDTILISSGTYHEAVDAKTKLLHFKGVDKNTVTLEYENGAYSLPPLEMSKGSVENMTIHAISQAQVSGEPGKAYCFHADYDIQIGHTLSFTNVKFINDDKQVIGVGLRNNFTIEFNSCDFVTPSGDNAFYVHDDPIRDNSSNQNLIVKDCSIVNNGTGATIHMQSQERVGAVAKVTWQRNIVVNLSGGKLIDVATYNNGLAKDKWLGSSDFVLQPTSAMNNIAQLNFN
Physico‐chemical
properties
protein length:728 AA
molecular weight: 80510,50120 Da
isoelectric point:5,35539
aromaticity:0,09203
hydropathy:-0,29231

Domains

Domains [InterPro]
IPR018913
10–147
IPR018913 IPR011050
G3DSA:2.60.40.3350
11–125
G3DSA:2.60.40.3350 IPR012334
QPL22303.1
1 728
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage GP15
[NCBI] 		2777330 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPL22303.1 [NCBI]
Genbank nucleotide accession
MW041635 [NCBI]
CDS location
range 6842 -> 9028
strand +
CDS
ATGAGTTTAGATAATTTTAGAAATAGAGCGATTGTATGGGATACGGTCAATAAAGACTTCCCACAACCAATTCAAATAATGCAAGGCGACGTCAACGCTAGAACATTGTCAGTTAAAATAATTGATAATGGAGGCGAAATTGATTTGACTGGTCATTCATTAAAACTTACATATCAATATACTAATAGCAGTAATTCAGGTTTTGTTATGATTCCTCCTGAAAACTTAACTAAAGGAGAGTTTCTTTTAGTAATTCCTACCGAAATGACAAAAGCTGGAGTTATTGAAGCGAACTTGATTCTTCTCAATGAAGATAAAGAACAAGTTATTGTCAGTAAGAATTTAACATTTATATCAGATAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAAATTATTATTGGAAAATATGCCACAAGTAATGCGCAGTGAGTTGAATGATTTACATGCTCAAACTGAATCAAATACGAGCAATATTGAGCTTAAAGCTAATCAAACGGATTTAAATAACTTACAAACTATTGTTAATAATCAAGGTATTACAATTTCCACAGCTGCTCAAGAAACAGAAGTACGTTCGCTGATTTCGCTTTTAGATAATGTAAAGCAAACGAAGAAAGTAGCACGTATCAATTTATTATTAGAACAATATAAAACAAGTGGATATTATCGTCAATACACAAATGGCGAAAAATTGGTTAATACTGACTATGACCTTTTCGACATGGTGCCAGTAAATGCTGATACTGACTACTTTACGGGTATTTCGCCAAATGCACATATTGCATTTTATGACTTTGAACAAAAATATATTTCTGGACTTCTAAAGCCTCAGCCTAACTTTGCAATACCTTCTTCATATTTAAATACATTAGTTGTAAAGGTTCCGACGAATGCTAAGTACATGTCTTATGCGTGCAAAAAAAATGCAACTCAATCAGTTTTTTACGAAAACTATAATCCTATTTTAGACACTTCTCAGTCAATTTTTGAAGGTTTACTACCATTTGAGCAAATCGCAAACCATCCGCGTGGTCTTAAAAAAGTGAGTAATCAAAATATGTTTAACAAAAAAATAGTTGTATCTGGAAGATACTTAGATTCAGCAAATGGTGGACTACCTCATAATGCTAATTATAATGTTTATTTTATGAAAGTAAAACCAAACACAAATTATACAACAAGTGGATTTGTTAATAACCATGATGCCTTTTATGATATATCAGGTAAATTCATTTCATCTGGAAACAAAAGCGGAACAATTACAACACCAGCGAATGCTTTCTTTTGGGGTATATCATTGACTAATACGGAATTGCCTGGGGCTGTTATCTGCGAGGGTAATGTTGCTAAATATAGTGATTTTGGCACAGGTGCCATATTTGAAGTTGTGGACACCGCCCCTCAAACTTTAAATGTTGGAGCTGATAAAAAATTTACTACCATTCAAGCTGCGGTTAATTTTGCAAAAGACGGTGATACTATCCTGATTTCTTCCGGAACTTATCATGAAGCAGTAGACGCCAAGACTAAGCTATTGCATTTTAAGGGTGTTGATAAAAATACGGTAACCCTAGAATACGAAAACGGAGCATACTCGTTGCCACCTTTGGAAATGTCTAAAGGAAGTGTTGAAAATATGACTATCCATGCAATCAGCCAAGCACAAGTTTCCGGAGAGCCTGGGAAAGCATATTGTTTCCACGCTGACTACGACATTCAAATTGGGCATACCTTGTCTTTTACAAATGTAAAATTCATTAATGATGATAAGCAAGTCATTGGCGTTGGATTGAGAAATAACTTTACTATTGAATTTAATAGTTGTGATTTTGTTACACCGTCCGGAGACAATGCTTTTTATGTACATGATGACCCAATCCGTGACAATTCAAGTAATCAGAATTTGATCGTTAAAGACTGCTCAATCGTTAATAATGGAACTGGTGCGACTATCCACATGCAATCGCAAGAACGTGTCGGGGCAGTTGCTAAGGTAACGTGGCAGCGCAATATTGTTGTTAATTTGTCAGGTGGTAAATTAATCGACGTGGCAACTTATAACAATGGTTTAGCAAAAGACAAATGGCTCGGCTCGTCTGACTTCGTGCTACAACCAACTTCTGCGATGAATAATATTGCTCAATTAAATTTTAATTAG

Tertiary structure

PDB ID
87f264e88d9a972f2d0f05cd93278c6c688dee8b03c805f149ee8fef14de680a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6972
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequences of 10 Lactococcal Skunavirus Isolated from the Same Canadian Cheddar Cheese Plant Dore,L., Perrault-Jolicoeur,A., Labrie,S., Rousseau,G., Tremblay,D. and Moineau,S. 2015 — GenBank