Protein

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Genbank accession
YP_010739082.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,56
Protein sequence
MAFVTGTAANHVDALDKLRLFLTSDDALSSLGQTWAQLRWVPDNVDSVDTNIPFGSGVQLPRLFRPDYRTQNYTSETNSQYLSSTSFTSGQYVRLKMRVAKAVTKFTLKAGTGSSLTNYTPRNFRLEYSDDGSTWTSAATLTDQRAWVANEERTFSVPSTGEHLWWRLVTLQTGDYQGTLTGQYWELRSIWLYDGDVLVSSSESNLVVKGPGLAGDEEIFLAFRTTYNTGTGEYAILVQGLTGYLPTEQSLHKQPGLHPSGWPVVPLWSAAMPYWFVGSGRRVVFVFKVSTVFESGYAGFFLPYASPEQYPYPLAIGGSMSPASSSYRYDYVSAAHSCFVMPGGNTGTSSSVDVVYNTTLNVMLPDGSWFDFQNRPTTSSNNSESYLTWSNSPASVLPHGTFNDSTSSGYGFRENIGGGFSVFPATLFQRRTAGRFLGELDGCFQISGFQNGSENTGTIAGEDYLVFQNTYRTDVREYWALKAE
Physico‐chemical
properties
protein length:484 AA
molecular weight: 53492,56360 Da
isoelectric point:5,19397
aromaticity:0,14050
hydropathy:-0,29711

Domains

Domains [InterPro]
G3DSA:2.60.120.260
67–194
G3DSA:2.60.120.260
IPR008979
82–155
IPR008979
YP_010739082.1
1 484
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage vB_Xar_IVIA-DoCa6
[NCBI] 		2975533 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010739082.1 [NCBI]
Genbank nucleotide accession
NC_073035 [NCBI]
CDS location
range 27170 -> 28624
strand +
CDS
ATGGCCTTCGTAACAGGCACGGCCGCCAACCACGTGGACGCGCTGGACAAGCTGCGCCTGTTCCTGACCAGCGACGACGCCCTGTCGTCGCTGGGCCAGACCTGGGCCCAGCTGCGCTGGGTGCCGGACAACGTGGACTCGGTCGACACCAACATTCCGTTCGGGTCGGGCGTCCAGCTGCCGCGCCTGTTCCGGCCCGACTACCGGACCCAGAACTACACCTCGGAGACCAACAGCCAGTACCTGAGCTCCACCTCGTTCACCTCCGGGCAGTACGTCCGCCTGAAGATGCGCGTCGCCAAGGCCGTGACCAAGTTCACCCTGAAGGCGGGCACCGGCTCGAGCCTCACGAACTACACCCCGCGCAATTTCCGGCTGGAATACTCCGATGACGGGTCGACCTGGACGAGCGCTGCCACGCTGACCGATCAGCGCGCCTGGGTGGCCAACGAGGAGCGCACCTTCTCCGTGCCCTCGACCGGCGAGCACCTGTGGTGGCGCCTGGTCACCCTGCAGACCGGCGACTACCAGGGCACGCTGACCGGGCAGTACTGGGAGCTGCGCTCCATCTGGCTGTACGACGGCGACGTCCTGGTGTCCTCCTCGGAGTCCAACCTGGTAGTCAAGGGCCCCGGCCTGGCGGGCGACGAGGAGATCTTCCTCGCCTTCCGCACCACCTACAACACCGGTACCGGCGAGTACGCCATCCTGGTGCAGGGCCTCACCGGCTACCTGCCGACCGAGCAGTCCCTGCACAAGCAGCCCGGCCTGCACCCGAGCGGGTGGCCGGTAGTGCCCCTCTGGTCTGCGGCCATGCCCTACTGGTTCGTCGGCAGCGGCCGGCGGGTCGTCTTCGTGTTCAAGGTGTCCACCGTCTTCGAGTCGGGGTACGCCGGGTTCTTCCTGCCGTACGCCTCGCCGGAGCAGTACCCGTATCCCCTGGCTATCGGCGGGTCCATGTCGCCCGCGTCGTCGAGCTACCGGTACGACTACGTGTCGGCGGCACACAGCTGCTTCGTCATGCCCGGCGGAAATACCGGCACCAGCTCGAGCGTGGACGTGGTGTACAACACCACCCTCAACGTGATGCTGCCCGACGGCAGCTGGTTCGACTTCCAGAACCGGCCCACCACCAGCAGCAACAACTCCGAGAGCTACCTGACCTGGAGTAACTCCCCGGCCAGCGTGCTGCCGCACGGGACCTTCAACGACTCCACCTCCTCGGGCTACGGCTTCCGCGAGAACATCGGCGGGGGCTTCTCGGTCTTCCCCGCCACCCTGTTCCAGCGGCGCACGGCCGGCCGGTTCCTCGGCGAGCTGGACGGCTGCTTCCAGATCTCGGGGTTCCAGAACGGCTCCGAGAACACCGGCACCATAGCGGGCGAGGACTACCTCGTCTTCCAGAACACCTACCGGACCGACGTACGAGAGTACTGGGCCCTCAAGGCGGAGTAA

Tertiary structure

PDB ID
1e757fed94a9e70ae7b8728daeefb635169fc5cbded12e6a2230b01e5494adf7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7258
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative analysis of new lytic phages for the biological control of phytopathogenic Xanthomonas spp. Domingo-Calap,M.L., Bernabeu-Gimeno,M., Aure,C.M., Marco-Noales,E. and Domingo-Calap,P. 2022-12-21 — GenBank