Phage RBP Database

Genbank accession

XRA40237.1 [GenBank]

Protein name

putative tail protein

RBP type

TF

Evidence RBPdetect

Probability 0,79

Protein sequence

MLTLNKINVDKGLENEVATADRDQFKFDGGEAGSRQIAAAKYHSKRGTITIIRKDGQQFDIGGLPTPAMFGTGKPGDRGGRGTDGRPGRNGRPGPTGATGCPGETGPRGLTGPTGEPGQDGPDGYQGEDGFAGAIGPTGDKGEDGLKGVRGPDGNPGPSCIAGAMGPTGPAPIERFVSSQTKPTDPAIRLWAFDTDSNNPSPLPDVPDLQISVSDLVLTALRSEAKSSWYHAVAWPEVRIVGGHGPFAFKWELIDSHLHENMSLESHGISARFAFRDQVQVGKEFDETVKIRVTVTDNGTASKTTLTRVASIRVIARNGGAHQCLVFGTLVETPSGFKPAEQIRVGDKIAAFTGQPRNIEEWRAAEINGSKMWATVIRANTGTADLYIEVSGSSRLTPEHPVLANVGGPWRYVRAVDLTNSSDIWTENGAERATVRTIAKTVDTVDIQIDLLHAFFAGNILVHNMDDSGYETKRKY

Physico‐chemical properties

protein length:	476 AA
molecular weight:	50764,02960 Da
isoelectric point:	5,98130
aromaticity:	0,06723
hydropathy:	-0,46534

Domain architecture

XRA40237.1

1 476 aa

STR 112–170 · STR 324–464 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

PTHR24637
Unmapped

PTHR24637 G3DSA:2.170.16.10

IPR008160
STR

IPR008160 cd00081

IPR036844
STR

IPR036844

XRA40237.1

1476 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0620
STR

DC_0620

XRA40237.1

1476 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
PTHR24637	Unmapped	-	71	170	PANTHER	COLLAGEN	-	-	-	-
IPR008160	STR	DC_0536	112	170	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
G3DSA:2.170.16.10	RBD	G3DSA:2.170.16.10	322	464	Merged direct domain	G3DSA:2.170.16.10	C-terminal	Low	Positional only	27 proteins / 27 hits
cd00081	RBD	DC_0422	324	464	InterPro cluster	cd00081	C-terminal	Low	Positional only	32 proteins / 32 hits
IPR036844	STR	IPR036844	324	464	Merged direct domain	Hint domain superfamily	Central	Low	Positional only	8 proteins / 8 hits

Proteins with similar domain architecture

Phage

Salmonella phage Sen-NF [NCBI] · taxon 3411927

No lineage information

Host

Salmonella enterica subsp. enterica serovar Typhi [NCBI] · taxon 90370

Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella

Genbank protein accession

XRA40237.1 [NCBI]

Genbank nucleotide accession

PV359490 [NCBI]

CDS location

range 94057 -> 95487
strand +

CDS

GTGCTTACACTTAATAAAATCAACGTAGACAAGGGATTGGAGAATGAAGTAGCTACTGCGGACAGAGATCAATTTAAATTTGATGGTGGCGAGGCTGGTTCTCGCCAAATCGCAGCAGCTAAATACCATTCTAAGCGCGGAACAATCACGATCATCCGAAAGGACGGACAGCAATTCGATATTGGAGGACTTCCAACTCCTGCAATGTTCGGAACCGGAAAGCCCGGAGATCGTGGTGGACGTGGGACCGACGGAAGACCGGGACGCAATGGACGTCCTGGCCCTACGGGAGCAACTGGATGTCCCGGTGAGACAGGGCCTAGAGGATTAACAGGTCCTACAGGGGAACCCGGACAAGACGGCCCTGACGGATATCAGGGAGAAGATGGATTCGCAGGAGCTATCGGCCCTACAGGAGACAAAGGGGAAGACGGATTAAAGGGAGTACGCGGCCCTGACGGAAATCCTGGCCCCTCGTGTATTGCCGGAGCTATGGGCCCAACTGGCCCAGCTCCTATCGAGCGATTCGTTAGTTCTCAGACAAAGCCCACAGATCCTGCAATACGTCTATGGGCATTTGATACTGACAGCAATAACCCAAGTCCGCTTCCTGATGTTCCCGATCTTCAAATCAGCGTATCAGATCTTGTATTAACTGCACTAAGATCCGAAGCAAAGAGTTCATGGTATCACGCAGTTGCATGGCCGGAAGTTCGCATTGTTGGCGGACACGGCCCTTTTGCGTTTAAGTGGGAACTTATTGACTCCCATCTGCATGAGAACATGAGCTTAGAATCCCACGGTATCTCAGCCCGTTTTGCATTCCGCGATCAGGTTCAAGTGGGTAAAGAGTTTGATGAAACAGTTAAGATCCGTGTCACAGTAACAGACAACGGGACGGCATCAAAAACAACTCTTACTCGCGTAGCTTCCATCCGTGTTATTGCACGAAACGGAGGCGCGCATCAGTGTTTAGTGTTCGGTACTCTAGTTGAAACTCCGTCAGGCTTTAAGCCAGCAGAGCAGATACGTGTTGGGGATAAGATCGCAGCATTCACTGGACAGCCGCGCAACATTGAGGAATGGAGAGCAGCAGAGATCAATGGATCGAAGATGTGGGCAACTGTTATCCGCGCTAACACAGGGACAGCAGATCTCTATATCGAAGTAAGTGGATCATCCCGCCTTACTCCCGAGCATCCAGTGCTTGCAAACGTAGGCGGCCCGTGGCGTTATGTACGCGCAGTCGATCTAACTAATTCGTCTGACATATGGACGGAGAACGGAGCGGAACGTGCTACAGTACGCACGATTGCAAAAACAGTTGATACCGTTGATATCCAGATCGATTTGCTTCATGCATTCTTTGCAGGAAACATTCTTGTTCATAACATGGATGACAGCGGATATGAAACGAAACGTAAGTATTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)