Phage RBP Database

Genbank accession

XPO96324.1 [GenBank]

Protein name

tail spike protein

RBP type

TF

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,99

Protein sequence

MSTTITNLPETSKVNGSDYLVLDQPDKTVKSTVSNFLTDTGVVLATQLKDTDGADLIQSSNGNTVQEELNNNLLNDREQWRRSLAEAGLTLVDGSFEEGATLNNNTDAVWYIAGAQCYTWGSGFPKDVPPKSTPTSTGGIGPSTWVSVSSKSLRQDIASNSGFALIGHCPGVSALRGIEPVSNGQKILLSGHTEGYNYGGGEFTAVLDGSTYTDDNGNYIKTTGGAVWIREKKTHAYAADYGFITNDASKATSNAAAIVAAAKFAFENGTDVWLPFGKKYIDDVVLNHPVTICANMTVFGSSLVSREQESDILHIGSGYAFDFTPQVRPTTPSSENPVIDGPALIGLSIRGTNNGKAGWRVNNSTVVGNESYARRNVTIKNCQVSGYHSGYGYEMYWTFTNKLHDVIVWDCAVTYYIRSCYATDHFGCIYENSSYGCLAINCYSNNHYGGAVEGIRSMSAHTKPAGYDENGNSPLSYDGIGFRVRGGNTTFYGGYVEANRIHAQIENAGRFAFSGTYINNTNTERMGHGISGELRVTHCNIQGDPSIGTWVQASASLHCSYAEIHSNAYVSGTTKPNTVPNIASVGEFDVYDGTISDSNGARRVRLGQDFQTGGYQTNGGVPRETYSEIFATRVVNAGNGSADRTVDISALATVTGQITALQSAGTLTFTNTNTAIAKEGRDLCFVINASGACSLVFGSGFRMVSSSPISLKNAQTAVIEFRSQGNKYYQKGPVNIMVT

Physico‐chemical properties

protein length:	739 AA
molecular weight:	79139,46920 Da
isoelectric point:	5,63811
aromaticity:	0,09608
hydropathy:	-0,29418

Domain architecture

XPO96324.1

1 739 aa

ATT 89–160 · STR 237–451 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.10.10.80
ATT

G3DSA:2.10.10.80 IPR011050

IPR040775
RBD

IPR040775

XPO96324.1

1739 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1953
STR

DC_1953

XPO96324.1

1739 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	89	160	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
IPR040775	RBD	DC_0821	93	149	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits
IPR011050	STR	IPR011050	237	451	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XPO96324.1

1 739 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	249	249	0,9875
Central domain	250	606	358	0,9762
C-terminal	607	739	132	0,9663

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Escherichia phage EF1-1 [NCBI] · taxon 3385239

Viruses

Host

Escherichia fergusonii [NCBI] · taxon 564

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

XPO96324.1 [NCBI]

Genbank nucleotide accession

PQ571289.1 [NCBI]

CDS location

range 87420 -> 89639
strand +

CDS

ATGTCAACTACAATTACTAATTTACCAGAAACATCAAAAGTTAATGGTTCAGATTACCTGGTTTTAGATCAACCTGATAAAACTGTTAAAAGCACAGTTTCCAACTTTCTTACTGACACTGGGGTGGTTTTAGCCACCCAGTTGAAAGATACAGATGGAGCAGATTTAATACAATCCTCAAATGGTAATACTGTTCAGGAAGAGTTGAATAACAATCTTCTTAATGATCGTGAACAGTGGCGTCGTAGTCTTGCTGAGGCAGGGTTAACACTTGTTGATGGTAGCTTTGAGGAGGGTGCTACATTAAATAATAATACTGATGCTGTCTGGTACATAGCGGGTGCTCAGTGCTACACATGGGGGTCTGGTTTCCCTAAAGATGTACCACCTAAATCAACCCCTACATCAACTGGTGGTATTGGCCCTAGTACGTGGGTTAGTGTTTCAAGCAAATCACTACGTCAAGATATCGCGTCAAATTCTGGTTTTGCTTTGATTGGCCATTGCCCTGGTGTTTCCGCGCTGCGAGGTATTGAGCCTGTTTCTAACGGGCAGAAAATTTTGCTGTCTGGTCACACAGAGGGTTACAACTACGGCGGCGGCGAGTTCACAGCAGTGTTGGATGGCAGCACGTACACTGACGATAACGGGAACTACATCAAAACAACTGGCGGCGCTGTCTGGATTCGTGAAAAGAAAACTCACGCGTATGCCGCTGACTATGGTTTCATAACCAACGATGCCAGTAAGGCCACCAGTAATGCTGCCGCTATTGTTGCTGCGGCAAAGTTTGCCTTTGAAAACGGAACCGATGTTTGGCTGCCTTTTGGCAAGAAATATATTGACGATGTTGTTTTAAATCACCCTGTGACAATCTGCGCCAACATGACGGTGTTTGGTTCTTCATTGGTAAGCCGTGAACAGGAATCTGATATCTTACATATTGGTAGTGGTTATGCGTTTGATTTCACGCCACAGGTAAGACCAACAACACCGTCAAGCGAAAATCCTGTTATTGATGGCCCTGCACTAATCGGCCTTTCAATTCGCGGCACAAATAACGGGAAGGCAGGATGGCGCGTAAACAATTCCACCGTGGTTGGAAATGAAAGCTACGCAAGACGTAACGTGACAATCAAAAACTGTCAGGTTTCCGGTTATCATTCCGGTTACGGTTACGAAATGTACTGGACGTTCACGAATAAACTCCATGACGTAATTGTGTGGGATTGCGCAGTCACTTATTATATTCGTTCATGCTATGCAACGGATCACTTTGGTTGCATTTATGAAAATAGTTCTTACGGCTGCCTTGCCATAAACTGCTATTCAAACAATCATTATGGTGGTGCTGTTGAAGGCATCAGATCGATGTCAGCTCACACAAAACCGGCAGGTTATGACGAAAACGGTAATTCACCGCTGTCTTATGACGGAATTGGATTCCGTGTTCGCGGTGGTAACACCACATTCTATGGTGGATATGTAGAAGCAAACCGCATTCACGCACAGATCGAGAACGCTGGACGATTTGCGTTTAGCGGAACCTATATAAACAACACAAACACAGAAAGAATGGGGCACGGTATTTCTGGTGAATTGCGTGTTACACACTGCAACATACAAGGTGATCCTTCGATTGGCACATGGGTGCAGGCGTCAGCGTCGCTTCATTGCTCTTATGCTGAAATTCACTCAAATGCTTATGTTTCAGGGACTACAAAACCAAACACCGTGCCAAACATTGCGTCTGTTGGTGAGTTCGATGTCTATGATGGAACCATTTCTGACAGCAACGGGGCAAGACGTGTTCGCCTCGGTCAGGATTTTCAAACTGGAGGATATCAGACAAACGGTGGTGTGCCGCGCGAAACATACTCTGAAATATTTGCGACAAGGGTTGTTAATGCTGGTAATGGTTCTGCTGACAGAACGGTTGATATCAGCGCACTTGCCACTGTCACAGGGCAAATAACAGCACTTCAAAGCGCTGGGACGCTGACGTTTACAAATACAAATACAGCAATCGCAAAAGAGGGTAGGGATCTGTGTTTTGTTATCAATGCTTCTGGTGCGTGTTCGTTAGTTTTTGGTTCCGGGTTCCGCATGGTGAGTTCATCACCAATAAGCCTGAAAAACGCTCAAACAGCCGTTATCGAATTTAGATCTCAAGGTAACAAATATTATCAAAAAGGGCCTGTAAACATTATGGTGACGTGA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)