Phage RBP Database

Genbank accession

YP_007517572.1 [GenBank]

Protein name

tail spike protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence GenBank

Probability 1,00

TSP

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,99

TSP

Evidence UniProt/TrEMBL

Probability 1,00

Protein sequence

MGNATRSDNLGLYSWESQDRLSESIPQVSSNFQALDEILSRAWIDIKSYGYDAKGNYNLSTGNGTDDAPAFQKALDRAQNRTSSVTIFVPDGTYRLGSELRIYSNTAIIMSPNATLVRDHSKYLLFNGVRATDGGSPISGYNGDGNILIQGGTLTGQGNKQTAKASIVHFGHAQNITFDNVTLKDCSNSHHIEFNACKDVYVKNCKFLGWFGTVDTYNEAIQLDLATPELTTVAGGDYTPCKNVYIDNTYFGKSTTAGSKPIGRGIGSHSGAINRFHENIHVTNCTFDSTVEWACRAYAYQDFFFTNNKIVNCGRGVNVRSNISSDDKDTINADTGAQTGKSQNISRFVISNNTFSGRMDAGRAIEIYGEETGRIYMTTITGNVVNLSSFAGSANEVIYLNYVRYANISGNNVGGANVGTCIGLNGNTTEVTIGNNICAFGDRGIAVYGANVVMQNISILGNTIRGMQRSGIHLDSIDGFSCVGNTVFDCNKAGGDENHIRVVVGNKNGTVSGNLCTVACPTSIYVSNTNSRINVTGNVLSGGLTNNSSGGASSNNI

Physico‐chemical properties

protein length:	557 AA
molecular weight:	59561,13680 Da
isoelectric point:	6,21156
aromaticity:	0,08438
hydropathy:	-0,28061

Domain architecture

YP_007517572.1

1 557 aa

STR 44–440 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR012334
STR

IPR012334 IPR006626 IPR006626

IPR024535
ENZ

IPR024535 IPR006626 IPR006626

IPR011050
STR

IPR011050

IPR006626
Unmapped

IPR006626 IPR006626

YP_007517572.1

1557 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0968
ATT

DC_0968 DC_1312

YP_007517572.1

1557 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR012334	STR	IPR012334	44	440	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR024535	ENZ	DC_0410	59	317	InterPro cluster	Rhamnogalacturonase A/B/Epimerase-like, pectate lyase domain	Central	High	Text match	420 proteins / 426 hits
IPR011050	STR	IPR011050	61	357	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR006626	Unmapped	-	197	218	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	300	321	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	345	369	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	428	449	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	454	476	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	506	528	InterPro	Parallel beta-helix repeat	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_007517572.1

1 557 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	49	49	0,9678
Central domain	50	546	498	0,9931
C-terminal	547	557	10	0,4125

Note: Constraints were applied during segmentation.
C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Bacillus phage Curly [NCBI] · taxon 2880541

Uroviricota Caudoviricetes Ehrlichviridae Andromedavirus bolokhovo Andromedavirus curly

Host

Bacillus pumilus BL8 [NCBI] · taxon 1189615

Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus pumilus

Genbank protein accession

YP_007517572.1 [NCBI]

Genbank nucleotide accession

NC_020479.1 [NCBI]

CDS location

range 18947 -> 20620
strand +

CDS

ATGGGTAACGCTACTAGATCAGACAACTTGGGCTTATACAGTTGGGAATCACAAGACAGACTTTCCGAGTCTATCCCTCAGGTAAGCTCAAACTTCCAAGCACTAGATGAAATATTGAGCCGTGCATGGATTGATATAAAGTCTTATGGCTATGACGCAAAAGGAAACTACAATTTAAGCACTGGAAATGGTACAGATGACGCTCCAGCATTCCAAAAGGCTTTAGACAGAGCACAAAACAGAACGAGTAGCGTCACTATCTTTGTGCCAGATGGAACATACCGACTAGGTAGTGAACTGAGAATATACAGCAATACAGCCATCATAATGAGCCCTAACGCCACCCTAGTCAGAGATCACTCAAAGTATCTCTTGTTCAACGGAGTAAGAGCCACAGACGGTGGGTCTCCTATCAGTGGGTACAACGGAGATGGTAACATTCTTATCCAAGGTGGAACCCTCACAGGTCAAGGTAATAAGCAAACAGCCAAAGCAAGTATTGTTCACTTTGGTCACGCTCAAAATATTACCTTCGACAACGTAACCCTTAAGGACTGTTCTAACTCGCATCATATCGAGTTTAACGCTTGTAAGGATGTATACGTTAAGAATTGTAAATTCCTCGGCTGGTTTGGAACAGTTGATACATACAACGAAGCTATCCAGCTAGACTTGGCAACTCCAGAGTTAACAACCGTGGCTGGCGGTGACTATACCCCTTGTAAAAATGTCTATATTGACAACACATACTTTGGGAAGTCAACCACAGCAGGGTCAAAACCAATTGGTCGAGGAATCGGGTCTCACTCAGGGGCTATCAACCGTTTCCATGAAAATATCCATGTTACAAATTGTACTTTCGATAGCACTGTAGAGTGGGCTTGTCGTGCTTATGCTTATCAAGATTTCTTCTTTACTAACAACAAAATTGTTAACTGTGGTCGTGGTGTCAACGTGAGGTCTAATATCTCATCGGATGACAAAGATACAATCAATGCTGATACAGGGGCGCAAACAGGCAAATCTCAAAATATCTCTAGGTTTGTTATCTCAAACAACACCTTTTCTGGTAGGATGGATGCAGGTCGAGCAATTGAGATATATGGGGAGGAAACTGGACGCATTTACATGACGACTATCACAGGTAATGTTGTCAACTTGTCATCCTTCGCAGGCTCAGCAAATGAGGTTATCTATCTCAACTATGTTCGATATGCAAATATCTCAGGTAACAATGTTGGCGGTGCTAATGTAGGTACTTGTATTGGTCTCAATGGAAATACTACAGAGGTTACTATCGGAAACAACATTTGTGCGTTTGGTGATCGTGGTATCGCCGTTTATGGTGCCAATGTGGTCATGCAGAACATCAGCATCTTAGGTAACACAATAAGAGGGATGCAAAGAAGCGGAATCCACCTTGATAGTATTGACGGGTTTTCTTGCGTTGGTAACACCGTATTTGATTGCAACAAGGCTGGCGGAGATGAAAATCATATAAGGGTTGTTGTCGGTAATAAAAATGGTACAGTCAGCGGCAATCTTTGTACAGTAGCTTGCCCCACTAGTATTTATGTTTCAAACACAAATAGTCGTATTAACGTCACAGGGAATGTATTATCTGGTGGTCTGACAAATAATTCATCGGGCGGAGCTTCTTCAAACAACATCTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)