Phage RBP Database

Genbank accession

WPJ50487.1 [GenBank]

Protein name

tail spike protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,99

Protein sequence

MANELIQPKGSVSKETNIQSIARITGVKISEVKYLEDNLDVTGIKYLYDSSTETVWKLNGDETGTVDSWVIQDDVIQLLTSNGTYTLRKYIIPDEIYASTFMFSVPNDGNTSANSSLKAMFNSNYVKFRIYPGTYLITDLIEIVFNKDVEVVCDDGVIFKLGNNVRKHMFHFYGDYNHNFSWFGGEIDGNWEGQGGEVVVNNHIDDVSHGFVVSRWNRVSLQNMYLHDCMGHHINHAGNNYFYANNIKINSHISSNFPSGGARGDGITGCSKHIYIDNVQGYSSDDLIGVFPGATWIPGETNLDKLQVDTITIRNIIAESKYDESNNLIYTWHAVTAGCWNNVSLRTLDIQNVKGECQDGGVRCRVSPSSGDDLTLIGNIDNIIIKNICCYVEGKSTDQYETCPVLIGTHQQSMTLTNRGINYKNILIDGVIVNTSGKIRTGIMVGHVNVESLIISNVIVNFVDNTDTCSAITLTGQSTIPRVEVSNVILANKGSETDTINNARPAIRVSLGATTVTSIKGNNITTRRSSDNLSWIGNVLYTSGFTNRVTLFGNDLIVNGNDNFVSVNPALGCYFKDRYLGSVRRDSLLGGWVFDDFCTVWDTTYFGRPNSTNFPAYNKVTDWKIGTVIKTTNSPIGECQGWVCTTGGSSPKWSIINSSYDDADNYITANSVPTSYTPRIKITTSIIGGSGWPETGGIVNTYTGAARGDRATAYQEFISVSGLVRYIRTWNTNTLSWNAWNKVIYVSS

Physico‐chemical properties

protein length:	748 AA
molecular weight:	82619,38830 Da
isoelectric point:	5,50721
aromaticity:	0,10027
hydropathy:	-0,21711

Domain architecture

WPJ50487.1

1 748 aa

ATT 1–95 · STR 122–461 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:3.30.2020.50
ATT

G3DSA:3.30.2020.50 IPR011050

WPJ50487.1

1748 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0574
RBD

DC_0574

WPJ50487.1

1748 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:3.30.2020.50	ATT	G3DSA:3.30.2020.50	1	95	Merged direct domain	G3DSA:3.30.2020.50	N-terminal	Low	Positional only	289 proteins / 289 hits
IPR011050	STR	IPR011050	122	461	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

WPJ50487.1

1 748 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	109	109	0,9771
Central domain	110	602	494	0,9888
C-terminal	603	748	145	0,9797

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Klebsiella phage RCIP0023 [NCBI] · taxon 3094191

No lineage information

Host

Klebsiella pneumoniae [NCBI] · taxon 573

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

WPJ50487.1 [NCBI]

Genbank nucleotide accession

OR532817.1 [NCBI]

CDS location

range 226782 -> 229028
strand -

CDS

ATGGCGAATGAATTAATCCAACCAAAAGGTTCAGTTTCAAAAGAAACTAATATACAAAGTATAGCTCGAATTACTGGAGTTAAGATTTCAGAAGTAAAATATTTAGAAGATAATTTGGATGTTACTGGTATAAAATATCTATATGATTCCAGTACTGAAACTGTTTGGAAACTAAATGGTGATGAAACTGGTACAGTGGATTCGTGGGTTATTCAAGATGATGTTATTCAACTACTAACATCAAATGGTACTTACACATTAAGAAAATATATAATACCTGATGAAATATATGCAAGTACGTTTATGTTTTCTGTTCCAAATGATGGAAATACATCAGCTAATAGTTCATTGAAAGCGATGTTCAATTCAAATTATGTTAAATTTAGAATTTATCCGGGAACGTACCTGATTACTGACCTAATTGAAATAGTCTTTAATAAAGACGTTGAAGTTGTTTGTGATGATGGTGTTATTTTTAAATTAGGAAATAATGTTAGAAAGCATATGTTCCACTTTTATGGTGATTACAATCATAATTTTAGTTGGTTTGGTGGTGAAATTGACGGAAATTGGGAAGGTCAGGGTGGTGAAGTTGTTGTTAATAATCACATCGATGATGTTTCTCATGGATTTGTTGTTTCTAGGTGGAACAGGGTAAGTTTACAAAATATGTATCTACATGATTGTATGGGGCATCACATAAATCATGCTGGTAATAACTATTTTTATGCAAACAATATAAAAATAAATTCTCATATAAGTAGTAATTTTCCATCAGGTGGTGCACGCGGTGATGGTATTACTGGTTGCAGCAAACATATTTACATTGATAATGTTCAGGGTTATAGTTCAGATGATCTTATTGGTGTTTTTCCTGGTGCAACTTGGATACCAGGAGAAACAAATTTAGATAAATTACAAGTTGATACAATTACAATTAGAAATATAATTGCTGAATCTAAATACGATGAATCTAATAATTTAATTTACACATGGCACGCTGTCACTGCTGGTTGTTGGAATAATGTATCACTAAGAACACTTGATATCCAAAACGTCAAAGGTGAATGCCAGGATGGTGGTGTGAGATGTAGAGTTTCCCCATCATCTGGTGATGATTTAACATTAATTGGTAATATAGACAATATTATAATAAAAAATATTTGTTGTTATGTTGAAGGTAAATCTACAGATCAATATGAAACATGCCCTGTTCTTATTGGTACACATCAACAATCTATGACATTGACTAATCGTGGTATTAATTATAAAAACATTTTAATAGATGGTGTTATAGTTAATACAAGTGGTAAAATCAGAACTGGTATTATGGTTGGTCACGTTAATGTTGAATCTTTAATTATTTCCAATGTAATAGTTAACTTTGTTGATAATACAGACACGTGCTCGGCGATTACATTAACTGGGCAATCAACTATACCTAGAGTTGAAGTTTCTAATGTAATTTTAGCCAATAAAGGAAGTGAAACTGATACAATTAATAATGCTAGACCTGCTATTAGGGTATCTCTTGGTGCAACAACCGTTACATCAATAAAAGGTAATAATATTACAACCAGACGTTCATCTGACAATTTATCATGGATTGGTAATGTATTGTACACATCTGGATTTACAAATCGTGTAACATTATTCGGTAATGATTTAATAGTTAACGGTAATGATAATTTTGTATCAGTTAATCCAGCACTCGGTTGTTATTTTAAAGATCGATATTTGGGTTCGGTTCGTCGAGATTCTCTATTGGGTGGTTGGGTATTTGATGATTTTTGTACAGTATGGGATACTACATATTTCGGTAGACCAAATTCAACCAATTTTCCAGCATATAACAAAGTTACTGATTGGAAAATCGGAACTGTAATTAAAACAACAAATTCACCAATTGGAGAATGTCAGGGTTGGGTGTGTACTACAGGTGGTAGTTCTCCAAAATGGAGTATAATTAATAGTTCATATGATGATGCAGATAATTATATAACAGCCAATTCAGTACCAACAAGCTATACACCTAGAATAAAAATAACAACTTCTATTATTGGTGGTAGTGGTTGGCCCGAAACTGGTGGAATTGTGAATACGTATACTGGAGCCGCAAGAGGTGATCGTGCAACCGCATATCAGGAGTTTATCTCAGTGTCTGGACTTGTGAGATATATTAGAACATGGAATACCAATACGTTATCGTGGAATGCATGGAATAAAGTTATATATGTATCATCATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)