Phage RBP Database

Genbank accession

YP_009788866.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TF

Evidence RBPdetect2

Probability 1,00

Protein sequence

MVSYQGDGTTTNFDFNFSGGYLRQSDVKAYVYDNLTGLTSPWTPVFVGPNTVQYKPALPATQYLVIYRDTQKTVPMVDFTTGAPMTEVNLDTVAEQSVFVAAEMTDRFDSVNSTSADAIVRSYDALTKAGSALDASAAATATADDARAKAVSAESKADAAVAQAADAHSIATGIDGKAQTALDQSTPALANANAALDVAGQALAIAQQQTMPSTGGTFTGPVSGPTPAPGDVSTKLATTAFVADAIASALIGQIVWEARTSARAGYVKLNGALLSRTSYPALWAYAQASGALVNEATWAGGSYGCFTSGTDGTNFRVPDLRGEFVRCLDDARGIDTGRGIGTWQDSTNRSHSHSASTGGVGDHIHSAWTDGQGWHGHGVSDPGHSHFGGLQTFAGGGQGASGNPNFVNQRWVDGSGTGISINGDGTHGHNVGIGYAGSHSHTVTVNADGGNETRPRNVALLATMRAL

Physico‐chemical properties

protein length:	467 AA
molecular weight:	48045,99780 Da
isoelectric point:	5,25132
aromaticity:	0,07709
hydropathy:	-0,20792

Domain architecture

YP_009788866.1

1 467 aa

ATT 2–109 · ATT 250–327 · STR 328–466 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR005604
ATT

IPR005604 SSF88874

IPR037053
ATT

IPR037053

YP_009788866.1

1467 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0245
STR

DC_0245

YP_009788866.1

1467 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR005604	ATT	DC_0240	2	109	InterPro cluster	Bacteriophage T7 tail fibre protein-like, N-terminal domain	Central	Medium	Text match	1326 proteins / 1328 hits
SSF88874	STR	SSF88874	246	466	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	250	327	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits

Proteins with similar domain architecture

Phage

Ralstonia phage RS-PII-1 [NCBI] · taxon 1932892

Uroviricota Caudoviricetes Autographivirales Sukuvirus Sukuvirus RSPII1

Host

Ralstonia solanacearum [NCBI] · taxon 305

cellular organisms Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales

Genbank protein accession

YP_009788866.1 [NCBI]

Genbank nucleotide accession

NC_047804.1 [NCBI]

CDS location

range 6430 -> 7833
strand -

CDS

ATGGTGTCGTACCAAGGTGACGGCACCACCACCAACTTCGATTTCAACTTCTCCGGGGGCTATCTGCGTCAGAGCGACGTGAAAGCCTACGTGTATGACAATCTGACCGGCCTCACCTCACCGTGGACGCCGGTATTCGTCGGGCCGAACACGGTCCAGTACAAGCCGGCCCTGCCGGCGACGCAGTACCTCGTGATCTACCGGGACACGCAAAAGACTGTCCCGATGGTTGACTTCACGACCGGCGCACCGATGACTGAGGTGAACCTGGACACCGTGGCCGAGCAGTCCGTGTTCGTGGCCGCCGAAATGACCGACCGCTTCGACTCGGTGAACTCGACCTCGGCTGACGCCATCGTGCGCAGCTACGACGCACTGACCAAGGCCGGGTCCGCACTCGACGCCTCCGCTGCGGCCACGGCCACGGCGGACGATGCGCGGGCGAAGGCTGTGTCCGCCGAGAGTAAGGCTGACGCCGCTGTGGCCCAAGCCGCCGACGCGCACAGCATTGCTACCGGCATCGACGGCAAGGCGCAGACGGCGCTGGATCAATCCACGCCAGCACTCGCCAACGCTAACGCGGCACTGGACGTGGCAGGGCAAGCCCTTGCCATTGCCCAGCAACAGACCATGCCCTCGACGGGAGGGACGTTCACTGGGCCGGTATCAGGACCGACTCCGGCCCCCGGAGACGTATCGACCAAGCTGGCGACGACCGCATTCGTTGCGGATGCTATTGCCAGCGCGCTCATCGGGCAGATTGTGTGGGAGGCCCGCACGTCGGCACGCGCTGGCTACGTCAAGCTGAACGGTGCCTTGCTGTCTCGCACGAGCTACCCGGCGCTATGGGCTTACGCTCAGGCATCCGGTGCGCTGGTCAATGAGGCCACATGGGCCGGTGGTAGCTATGGCTGCTTCACCTCGGGCACTGACGGCACGAACTTCCGTGTGCCGGACCTCCGTGGCGAGTTCGTCCGCTGCTTGGATGACGCTCGCGGCATCGACACCGGGCGCGGCATCGGTACGTGGCAGGACAGCACCAACCGCTCGCACAGCCACAGCGCATCGACTGGCGGAGTTGGCGACCACATCCACTCCGCATGGACTGACGGCCAAGGCTGGCACGGGCACGGTGTATCCGATCCGGGGCACAGCCACTTTGGCGGCCTGCAAACCTTCGCGGGTGGTGGGCAAGGTGCATCCGGCAACCCGAACTTCGTGAACCAACGTTGGGTGGACGGCTCGGGGACCGGAATCAGCATCAACGGCGACGGCACCCACGGTCACAACGTGGGCATCGGTTACGCCGGTAGTCACAGTCACACAGTCACCGTCAACGCTGACGGTGGAAACGAAACCCGTCCGCGCAACGTCGCGCTGCTCGCAACCATGCGGGCGCTCTAA

Title	Authors	Date	PMID	Source
Isolation, Whole Genome Sequencing Analysis of a Novel Lytic Bacteriophage RS-PII-1 infecting Ralstonia solanacearum	Su,J., Liu,J., Yu,H., Guo,Z., Sun,H., Fan,G., Gu,G. and Wang,G.	2017-09-19	—	GenBank

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature