Phage RBP Database

Genbank accession

WVX87119.1 [GenBank]

Protein name

long-tail fiber proximal subunit

RBP type

TSP

Evidence RBPdetect

Probability 0,54

TF

Evidence RBPdetect2

Probability 0,76

Protein sequence

MVAKSFRARSGLDAAGEKVINVGKADRNTLSDGVNVDFFNEFNGIQQYDPTRGYSQDMAIIYARRIWYAKQNIASPAGAFDESKWIATRNDPKWVYSNVTTPDGSIIESGSYIMADGRFTELLYLLPDNPTEGDVITFKDCGGLVGVNSILVKSNTRQIRLRTVQSAQYRLTHPYMIATFIYNGNVWRVAETLDNRDSEIVNATGTGSFQLQSGMTVFRNSATGKITLQLPKYANDGDVITTYDADKMNSINVAVLQIYPGSGHTISDGASTGVTSVTSQKSGFGMFIFDAQNSQWKVYDADNRVRLRRIYSDLNAVPNDYVFVTTNPSGTIPNVTVTLPTDVADGDRVYVSLYMMGKNQNCTIKVKDGTTDKIRTNKNMMQFPQRKEYPPDDWFSVTSLAFNAASDYLPYIEFSYLKSTKEWVVSNYRPIVERVDATNRSRTGVIALAAQAEVNKNLEDNPNDETAITPKTLANKTATETRRGIARLATTAEVNKLSTDAYLDDVIVTPKKLNERTATETRRGLAEIATQAETNGSTDDITIVTPKKLHNRIASPTLTGILALVATGGTANTNTDRAQAGTGIYDHSDYQKAVTPKTLREYKATELQSGAVWLANLNEVINGTVASSNIPTVVTPEMLHKKTSTDGRIGLIEIATQAETNAGTDYTRAVTPKTLNDRAATESLTGIIAIATTAEVSAGTVTNKAIVPSKLKGYLDDTSHITVATADGLTQSGTIWTTVNIGIQSATETQRGTLRVATQSETNAGTLDTVFVTPKKLHAKKATESAEGIIQVATAAETTAGTVANKAVSPKNLKNTIQVDTSWQATDLVRGTVKLSKGLGTWSGNDVAGSTLPDDGYASVGVAVSPYELNLTLKHYLPIGAKAVDADKLDNLDSSQFIRRDVNQTVNGALTLTKATTVQADINSTADASFRVMNVSGDLNVGDGSSMGKLRLNGGSSNDWSIQASSASGRIAMISTGNTGTVHLSVYNDTRGVVANVKFQAPEIQAIGKVTLGNDTVITAAGSVLSMGTNNKTTKILTSDAGNILAEESGNSYKVFTEKNAQTLLNPTYVRKAGDTMSGRLTVSNSSIIIAGQAAWSTLDAVTEASRGNWTAEITASAQYNLLPGYAVPVLEPDPINPEIMIVTRYTYVKAPGTLTQFGNGTAFTYQIWAPRPTSGTGVNALAQSFWIRQMNPITGKFDGWGRMYTSNNPPTAGEIGATSAVGTTVKNMTVTDWIKVGNVKIYPDPVTQTVKFEWVA

Physico‐chemical properties

protein length:	1257 AA
molecular weight:	135248,95340 Da
isoelectric point:	6,81297
aromaticity:	0,07080
hydropathy:	-0,27836

Domain architecture

WVX87119.1

1 1257 aa

ATT 1103–1205 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR048391
ATT

IPR048391

WVX87119.1

11257 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1946
ATT

DC_1946 DC_1209

WVX87119.1

11257 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR048391	ATT	DC_0875	1103	1205	InterPro cluster	Long-tail fiber proximal subunit domain	C-terminal	Medium	Text match	795 proteins / 796 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

WVX87119.1

1 1257 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	829	829	0,8087
Central domain	830	1050	222	0,2633
C-terminal	1051	1257	206	0,7078

Note: Constraints were applied during segmentation.
Fixed 86 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Klebsiella phage KP1LMA [NCBI] · taxon 3119532

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Klebsiella pneumoniae [NCBI] · taxon 573

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

WVX87119.1 [NCBI]

Genbank nucleotide accession

PP002985 [NCBI]

CDS location

range 82499 -> 86272
strand +

CDS

ATGGTAGCTAAATCATTCCGCGCACGAAGTGGCCTTGATGCTGCTGGTGAAAAAGTTATCAACGTTGGGAAGGCTGATCGTAATACGCTGAGTGACGGCGTTAACGTTGACTTTTTCAATGAATTTAACGGAATCCAGCAGTATGACCCGACTCGTGGTTATTCTCAAGACATGGCGATCATTTATGCGCGTCGTATCTGGTACGCAAAACAGAATATTGCTTCCCCTGCTGGGGCTTTCGACGAATCCAAATGGATCGCAACTCGTAATGACCCGAAATGGGTTTATAGTAACGTAACCACTCCAGACGGTAGCATTATTGAATCTGGTAGTTACATTATGGCTGATGGACGCTTTACTGAACTTCTGTACCTGCTGCCGGACAACCCGACAGAGGGCGACGTAATCACGTTTAAAGATTGTGGTGGTTTAGTAGGTGTGAACAGTATCCTTGTTAAGTCTAACACCCGTCAGATCCGTTTACGTACTGTACAATCGGCACAGTATCGACTGACCCACCCGTACATGATCGCAACGTTTATCTATAACGGTAACGTATGGCGTGTTGCTGAAACTCTGGATAACCGCGATTCTGAGATCGTGAACGCAACCGGAACAGGTTCATTCCAGTTACAATCTGGCATGACAGTTTTCCGTAACAGTGCTACAGGTAAAATCACTCTCCAGTTGCCGAAATATGCAAATGATGGTGATGTGATCACAACCTATGACGCTGATAAAATGAACTCTATCAACGTAGCCGTTTTGCAGATTTATCCAGGTAGTGGACACACTATTTCTGATGGTGCAAGTACTGGTGTTACTTCGGTAACTAGCCAGAAATCCGGCTTTGGTATGTTCATCTTTGATGCACAGAATAGCCAATGGAAAGTATATGATGCTGATAACCGTGTTCGTCTGCGTCGTATCTACAGTGATTTAAACGCGGTTCCTAATGATTACGTTTTTGTTACTACAAACCCTTCTGGGACTATACCAAACGTTACAGTTACCCTTCCAACTGATGTTGCTGATGGTGATCGCGTTTACGTATCCCTTTATATGATGGGTAAGAACCAGAACTGTACAATCAAAGTTAAAGATGGTACAACGGACAAGATCCGCACCAACAAAAATATGATGCAGTTCCCGCAGCGCAAAGAGTATCCGCCCGATGATTGGTTTAGCGTAACTTCATTAGCATTTAATGCTGCTAGTGATTACCTCCCGTATATCGAGTTTTCTTACCTGAAATCTACGAAAGAATGGGTTGTTTCTAATTATCGCCCGATCGTTGAACGTGTTGACGCAACTAACAGATCGCGTACTGGTGTTATTGCTCTGGCTGCACAGGCAGAAGTAAACAAAAACTTGGAAGATAACCCTAACGACGAAACCGCTATTACTCCGAAGACGTTAGCAAATAAAACTGCTACTGAAACCCGTCGTGGTATTGCGCGTTTAGCAACAACTGCTGAGGTTAACAAACTTTCAACCGATGCCTATCTGGATGATGTGATTGTTACCCCTAAGAAGCTGAACGAAAGAACAGCAACTGAAACCCGTCGTGGGCTGGCAGAAATCGCAACTCAGGCAGAAACAAACGGAAGCACCGATGATATTACTATTGTAACCCCTAAAAAGTTGCATAACCGTATTGCATCGCCGACCTTGACTGGTATCCTTGCCCTTGTTGCTACTGGTGGTACTGCAAACACCAACACAGACCGTGCTCAGGCTGGTACTGGAATTTATGATCACTCAGATTATCAAAAAGCGGTAACGCCTAAAACACTGCGTGAGTATAAAGCAACTGAATTGCAATCCGGTGCTGTATGGCTGGCAAACCTGAATGAAGTTATTAACGGTACTGTTGCAAGTTCAAACATTCCGACCGTTGTTACTCCGGAAATGCTGCACAAGAAAACCTCTACGGATGGTCGTATTGGTTTGATCGAGATTGCTACCCAGGCAGAAACCAACGCAGGGACTGATTACACGCGAGCGGTGACGCCTAAAACGCTTAACGATCGTGCTGCAACGGAATCGCTGACAGGTATCATTGCAATTGCAACCACTGCCGAAGTATCAGCAGGTACTGTAACGAATAAAGCGATCGTACCGTCTAAACTGAAAGGTTATTTGGACGATACAAGCCATATTACTGTTGCTACTGCTGACGGATTAACTCAATCTGGTACTATCTGGACTACGGTTAACATCGGTATTCAATCAGCAACTGAAACTCAACGTGGTACTTTACGCGTTGCTACGCAGTCTGAGACGAACGCAGGGACATTAGATACAGTATTTGTCACCCCTAAGAAGTTACACGCTAAGAAAGCGACTGAGAGCGCAGAAGGTATCATTCAGGTGGCTACGGCTGCTGAAACTACCGCTGGCACCGTTGCAAACAAGGCTGTTTCTCCTAAGAACTTGAAAAATACAATTCAGGTTGATACTTCATGGCAAGCTACCGATCTGGTACGTGGTACTGTGAAGCTGTCTAAGGGGCTTGGTACTTGGTCGGGTAATGATGTGGCTGGTTCTACTCTTCCGGATGATGGTTACGCCTCTGTAGGTGTTGCTGTTTCTCCTTATGAATTGAACCTGACGCTGAAACATTATCTGCCGATCGGTGCTAAAGCGGTTGATGCTGATAAACTGGATAACCTGGATTCTTCCCAGTTCATTCGTCGTGATGTTAATCAGACGGTTAACGGGGCATTGACTCTAACGAAAGCAACCACTGTACAGGCTGACATTAACTCAACAGCCGACGCAAGTTTCCGGGTAATGAATGTTAGTGGAGATCTGAACGTTGGTGATGGTTCATCGATGGGTAAACTTCGTTTGAATGGTGGTTCATCTAACGACTGGTCAATTCAAGCAAGTTCAGCCTCTGGGCGTATTGCAATGATCTCAACGGGTAATACTGGCACAGTTCATCTTTCTGTGTATAATGATACTCGCGGCGTTGTCGCTAACGTTAAATTCCAGGCTCCTGAAATTCAGGCGATTGGCAAAGTGACTCTGGGTAATGATACAGTGATCACGGCTGCTGGTTCTGTTCTCTCTATGGGTACGAACAACAAGACAACTAAGATCCTAACTTCGGACGCTGGTAACATTTTGGCAGAAGAATCAGGGAACTCTTATAAAGTCTTTACTGAGAAGAACGCGCAAACCTTGCTGAATCCTACGTATGTACGTAAAGCAGGTGATACGATGTCTGGGCGCTTGACGGTAAGCAACAGTTCAATTATCATTGCAGGTCAAGCGGCTTGGTCAACGCTGGATGCAGTAACAGAAGCATCCAGGGGCAACTGGACGGCTGAGATCACAGCATCGGCACAATACAACTTGCTTCCTGGTTATGCGGTTCCGGTTCTTGAACCAGATCCGATTAATCCAGAAATCATGATTGTAACCCGTTATACCTATGTTAAAGCACCGGGTACTTTAACGCAGTTTGGTAACGGAACTGCATTCACTTATCAGATTTGGGCACCTCGTCCGACCTCTGGTACTGGTGTTAATGCGCTGGCGCAATCCTTCTGGATCCGTCAAATGAACCCAATTACGGGTAAATTTGATGGTTGGGGCCGCATGTATACTAGCAACAACCCGCCTACTGCTGGTGAGATTGGTGCAACGTCTGCTGTTGGTACTACGGTTAAAAACATGACTGTTACCGATTGGATCAAAGTTGGTAATGTTAAGATTTACCCAGATCCGGTTACTCAGACAGTTAAATTTGAGTGGGTGGCATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)