Phage RBP Database

Genbank accession

YP_004893846.1 [GenBank]

Protein name

tail protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect2

Probability 0,36

Protein sequence

MYPIPCLFLTLSGGGTEPLPPGSVKKVAFTRGLVGGATKRSMAILLIDGRLYTQGDNAWSECANGNISPFKDHWHLAANGVADVFGGGRAFVVKYNNGGWQYCGDTSQFTGSGSIYSSWTSFPSSITGTVSLANLQSVSCALGNTLWQMVDGRLYGSGSNTNGCLGSGNTTVISIPRSISASSVRAYSLNACVTYLNNIGLPRVCGATHQIDGTSTTQTQNFIDVSFASVTETVYVKEWLANETNSMAIASTGVDDTEHYLYTRGIGTAQYSKKEGIGPFETFRVIDGGQSHFLIADNKLYGLGDLSAQLGLGTPSTMVLEPTLVPVPTGRDWDLSKLTYIVDMKTDVLNQGNSISHWMVYDGNLYYAGNLYGFFGSTDSTGEFTNIPEASFGGTTADAITTGSIPYAIKGSRSQLTWTVEPADAEIYDISFTSSAPNIATVDSNGIMTFLEEGGFDITMTAKTGSGADAKTLTDTSGGYVSIFSVTTDSIPQKEVGDVFVFMDKNSPDYTPGPNVVGMEISPANVDTNFIDGELTTTNPDVVMIDEGGFLSCIAVGDARCGVRLIYREGQVEAFDDSYVSVSDFTAPPDPVDPGEPVVPSQPQ

Physico‐chemical properties

protein length:	604 AA
molecular weight:	64057,50670 Da
isoelectric point:	4,36827
aromaticity:	0,09768
hydropathy:	-0,08129

Domain architecture

YP_004893846.1

1 604 aa

STR 37–475 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR009091
STR

IPR009091 G3DSA:2.60.40.1080

IPR009091
STR

IPR009091 IPR008964

IPR000408
STR

IPR000408 IPR003343

YP_004893846.1

1604 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0918
STR

DC_0918 DC_0179

DC_1711
RBD

DC_1711

YP_004893846.1

1604 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR009091	STR	IPR009091	37	402	Merged direct domain	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Central	Low	Positional only	141 proteins / 141 hits
IPR009091	STR	IPR009091	41	376	Merged direct domain	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Central	Low	Positional only	141 proteins / 141 hits
IPR000408	STR	DC_0062	151	183	InterPro cluster	Regulator of chromosome condensation, RCC1	Central	Low	Positional only	52 proteins / 98 hits
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	403	475	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR008964	RBD	IPR008964	405	468	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR003343	STR	DC_0008	409	472	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_004893846.1

1 604 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	86	86	0,0793
Central domain	87	346	261	0,7614
C-terminal	347	604	257	0,1336

Note: Constraints were applied during segmentation.
Fixed 89 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Salmonella phage PVPSE1 [NCBI] · taxon 889338

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Salmonella enteritidis [NCBI] · taxon 149539

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

YP_004893846.1 [NCBI]

Genbank nucleotide accession

NC_016071 [NCBI]

CDS location

range 24069 -> 25883
strand -

CDS

ATGTATCCTATTCCATGTCTCTTCTTGACATTATCTGGAGGAGGAACAGAACCACTACCACCAGGTAGTGTTAAGAAGGTGGCCTTTACCCGTGGTCTGGTTGGTGGTGCTACCAAAAGGTCAATGGCGATCCTCCTGATTGATGGGAGACTCTATACCCAAGGGGATAATGCGTGGTCTGAATGCGCAAACGGGAACATAAGCCCGTTTAAGGATCATTGGCACTTGGCGGCTAATGGTGTAGCTGATGTTTTTGGTGGTGGTAGAGCCTTTGTTGTCAAATACAACAATGGTGGCTGGCAGTATTGTGGGGACACCAGTCAATTCACTGGTAGTGGGTCTATCTATTCTTCTTGGACAAGCTTCCCTTCATCAATCACAGGCACAGTATCCCTCGCAAATTTACAAAGTGTTTCTTGTGCTCTCGGTAACACACTCTGGCAGATGGTAGATGGAAGACTTTATGGAAGCGGGTCAAACACAAATGGATGCCTTGGCTCTGGTAATACTACCGTAATATCGATCCCAAGAAGTATTAGTGCATCCTCTGTGAGAGCTTACAGCTTAAATGCTTGCGTGACATACCTGAACAATATTGGACTTCCCCGTGTTTGTGGGGCCACCCATCAGATAGATGGTACTTCAACAACACAAACACAAAACTTTATCGATGTTAGTTTTGCCTCTGTGACTGAAACCGTCTATGTTAAAGAGTGGTTAGCGAACGAAACAAACTCAATGGCTATCGCCTCTACAGGTGTTGATGATACAGAGCATTATTTATATACGAGGGGTATCGGGACAGCCCAATACTCTAAGAAAGAGGGTATTGGTCCTTTCGAGACATTCAGGGTTATCGACGGTGGTCAGTCTCATTTCCTGATTGCTGATAACAAGCTTTACGGTCTTGGTGACCTAAGTGCTCAACTTGGCCTTGGCACACCATCAACAATGGTGTTAGAACCGACCCTTGTTCCAGTTCCTACAGGAAGGGATTGGGATCTTTCGAAGCTGACATACATTGTAGACATGAAGACAGATGTCCTTAACCAGGGGAACTCTATCAGCCATTGGATGGTGTATGACGGGAACCTTTACTACGCTGGTAACCTTTATGGTTTCTTTGGGTCAACCGATAGCACTGGTGAGTTCACAAACATCCCAGAAGCATCCTTTGGGGGGACAACTGCGGATGCTATCACCACAGGGTCTATCCCATACGCTATCAAAGGGTCGAGAAGTCAACTTACGTGGACTGTTGAGCCAGCAGATGCTGAGATTTATGATATTTCGTTCACATCGAGTGCTCCTAATATCGCAACTGTAGACTCAAATGGTATCATGACCTTCCTTGAAGAGGGTGGTTTTGACATCACAATGACTGCTAAAACAGGGTCTGGCGCGGATGCTAAAACACTCACAGATACTTCTGGCGGTTATGTTTCCATCTTCTCTGTGACTACCGATTCCATCCCACAAAAGGAAGTTGGTGATGTGTTCGTGTTCATGGATAAAAACAGTCCTGACTATACACCAGGTCCGAACGTTGTCGGAATGGAAATTTCTCCAGCCAATGTTGATACTAACTTCATAGACGGAGAATTAACAACTACAAATCCGGATGTGGTGATGATTGATGAGGGTGGATTCCTTTCCTGTATTGCAGTTGGTGATGCCCGTTGTGGTGTTCGTCTTATTTACAGGGAGGGTCAGGTTGAGGCATTTGATGATTCGTATGTCAGTGTTTCAGACTTCACAGCCCCACCAGATCCTGTGGACCCCGGCGAACCAGTTGTACCTTCTCAACCGCAATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)