Phage RBP Database

Genbank accession

AUV64039.1 [GenBank]

Protein name

tail fiber/host adhesion protein

RBP type

TF

Evidence RBPdetect

Probability 0,88

TSP

Evidence RBPdetect2

Probability 0,61

Protein sequence

MAISSGWVGSSAVSETGQRWMSAAMQAVRLGRPAYMSAMVGRSKEIHYSIGASNSYNKDTLINWMKAQGSTPVVITITGNIVSQSTGVPCLDFPSSLTNEYVTLIINSGVHVWGRGGNGGNNSAGGAGGNAINNGIGTRLRITNNGAICGGGGGGGGGYWSPFPQMKLTFGGGGGRPFGAAGGSANMEQGATAGTISAPGKGSVNGIYNGGNGGDAGGAGGKCNIRGQGSEYNGGAAGKAVTGNAPRWDKVGTIYGARV

Physico‐chemical properties

protein length:	259 AA
molecular weight:	25672,25450 Da
isoelectric point:	9,81578
aromaticity:	0,06950
hydropathy:	-0,20425

Domain architecture

AUV64039.1

1 259 aa

ATT 1–40 · RBD 45–259

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR048291
ATT

IPR048291 IPR007932

AUV64039.1

1259 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1679
STR

DC_1679

AUV64039.1

1259 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR048291	ATT	DC_0779	1	40	InterPro cluster	Phage tail fibre adhesin Gp38, N-terminal domain	N-terminal	High	Text match	530 proteins / 530 hits
IPR007932	RBD	DC_0283	45	259	InterPro cluster	Receptor-recognising protein Gp38	Central	High	Text match	553 proteins / 553 hits

Proteins with similar domain architecture

Phage

Shigella phage Sf20 [NCBI] · taxon 2024307

Uroviricota Caudoviricetes Pantevenvirales Krischvirus Krischvirus RB49

Host

Shigella flexneri [NCBI] · taxon 623

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

AUV64039.1 [NCBI]

Genbank nucleotide accession

MF327006 [NCBI]

CDS location

range 146125 -> 146904
strand -

CDS

ATGGCAATATCTTCTGGATGGGTAGGATCATCTGCTGTGTCCGAGACTGGTCAACGGTGGATGAGCGCCGCAATGCAAGCTGTACGCTTAGGTCGTCCGGCGTATATGTCGGCAATGGTCGGACGCTCTAAAGAGATTCATTATAGCATTGGTGCTAGTAACTCTTACAATAAAGACACTCTTATTAACTGGATGAAAGCACAAGGATCTACTCCTGTAGTAATTACTATCACAGGTAATATTGTTTCCCAATCTACTGGCGTTCCTTGTCTTGACTTCCCTAGCTCGTTAACAAACGAGTATGTAACACTGATCATCAACTCCGGTGTTCATGTTTGGGGGCGTGGTGGTAATGGTGGCAATAACTCCGCTGGTGGTGCTGGTGGTAATGCAATTAACAACGGTATAGGCACACGCTTACGCATCACAAATAACGGCGCTATTTGCGGTGGCGGTGGCGGTGGCGGCGGAGGATACTGGTCTCCTTTTCCACAAATGAAATTGACTTTTGGAGGTGGCGGCGGTCGTCCATTTGGCGCTGCCGGTGGGTCTGCTAATATGGAACAGGGTGCTACTGCTGGTACTATTTCCGCGCCAGGTAAAGGGTCTGTCAACGGTATATATAATGGCGGTAACGGTGGTGATGCTGGTGGCGCTGGTGGTAAATGTAATATCCGTGGACAGGGATCGGAATATAATGGCGGAGCGGCTGGTAAGGCTGTTACTGGCAATGCCCCTCGCTGGGATAAAGTAGGCACGATCTACGGTGCTCGCGTGTAA

Title	Authors	Date	PMID	Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment	Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N.	2020-09-29	—	GenBank

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature