Phage RBP Database

Genbank accession

XOD42760.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect

Probability 0,91

TF

Evidence RBPdetect2

Probability 0,98

Protein sequence

MPNIMKPTGINAIWSENGQKVDPGAVKVGLGWVTELPPYQTANFIEYKQDLFNAHVNQHGIPEWDSVTEYQGNLSYTQGSNGVIYKCLRTHSDKIPTDPLNITAGYWRAAFEDAGEATKVQANLDRHVTNYNTLSGIGNVVIARQNLSVYSRAEGDARYAMLHGNGSNVFSVAPATQPTHAIPLSQLSTLVPPATETVAGVMAVATTIETEAGANDTKAVSPLKAAQVYLKRKDNLSNLSNVTAARANLGLSDTATMPSSTFLKAASNLADVPNKALARSNLGITSSATQPETYFLRSAQNLADVPNKAQARVNLGLTAMATTAPSAVVMKADNLAGLTNTAAARSNLGLGTASTRNVGDFLSSGANLADLTNIQAARNNLGLKGGATLDVWGLPANTTAMDFQSSQSDISRGWARLPNGLLLQWGTGPGLSDDTRTNIQLPVPARILNVQVTVMGTFNNSIGPGAFMTDMWSNTGFRVSCNWGNWSYPFNWFAITSTL

Physico‐chemical properties

protein length:	499 AA
molecular weight:	53036,90330 Da
isoelectric point:	7,74780
aromaticity:	0,07214
hydropathy:	-0,17836

Domain architecture

XOD42760.1

1 499 aa

RBD 406–495 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.60.40.3940
RBD

G3DSA:2.60.40.3940

IPR054075
RBD

IPR054075

XOD42760.1

1499 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0043
STR

DC_0043 DC_0362

XOD42760.1

1499 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.60.40.3940	RBD	G3DSA:2.60.40.3940	406	495	Merged direct domain	G3DSA:2.60.40.3940	C-terminal	Low	Positional only	77 proteins / 77 hits
IPR054075	RBD	DC_0717	416	495	InterPro cluster	Putative tail fiber protein gp53-like, C-terminal	C-terminal	Low	Positional only	174 proteins / 174 hits

Proteins with similar domain architecture

Phage

Pseudomonas phage HHBS18_1 [NCBI] · taxon 3390390

Viruses

Host

Pseudomonas aeruginosa [NCBI] · taxon 287

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales

Genbank protein accession

XOD42760.1 [NCBI]

Genbank nucleotide accession

PQ287651.1 [NCBI]

CDS location

range 21595 -> 23094
strand +

CDS

ATGCCAAACATTATGAAGCCTACGGGTATTAACGCTATCTGGTCTGAAAACGGCCAGAAGGTTGACCCGGGTGCTGTAAAAGTTGGGCTTGGATGGGTGACAGAACTACCTCCCTACCAAACTGCCAACTTCATTGAATACAAGCAAGACTTGTTCAACGCACACGTTAACCAGCACGGTATCCCCGAATGGGATAGCGTCACAGAGTATCAGGGAAACCTGAGTTATACTCAAGGTTCTAACGGTGTGATCTACAAGTGCCTTAGAACCCATTCCGACAAGATTCCAACCGACCCTCTCAACATCACAGCAGGATACTGGCGGGCGGCGTTCGAGGATGCAGGGGAGGCGACCAAGGTTCAAGCTAACCTTGATCGGCACGTGACAAACTACAACACCCTCTCTGGAATCGGAAACGTAGTTATTGCAAGACAGAACCTGAGCGTGTATAGTAGAGCGGAAGGCGACGCCCGTTATGCTATGCTGCACGGTAATGGATCGAACGTCTTTAGCGTAGCACCAGCTACTCAGCCTACACATGCCATCCCACTAAGCCAGCTATCTACTCTTGTCCCTCCTGCGACTGAGACTGTAGCCGGGGTTATGGCAGTTGCTACGACTATTGAGACAGAAGCCGGAGCCAACGATACCAAGGCTGTCAGTCCTCTGAAGGCTGCTCAAGTGTATCTGAAGCGGAAGGATAACCTGTCCAACCTGAGCAACGTCACAGCAGCTAGAGCTAACCTAGGGCTCTCTGATACGGCCACGATGCCATCTAGCACGTTCTTGAAGGCAGCCAGCAACCTAGCTGACGTCCCTAACAAGGCGCTAGCCAGATCGAACCTAGGCATCACCAGTAGCGCTACTCAGCCTGAGACCTACTTCCTTAGAAGTGCTCAGAATCTAGCAGATGTTCCTAACAAGGCTCAAGCTAGAGTGAATCTGGGGCTAACTGCTATGGCAACTACGGCTCCTTCCGCTGTTGTCATGAAAGCTGACAACCTAGCCGGGCTGACAAATACAGCCGCTGCCCGCTCTAACCTTGGACTAGGCACAGCCTCTACTCGAAACGTCGGAGACTTCCTCTCGTCTGGTGCTAACCTAGCAGACTTGACAAACATTCAAGCAGCTAGAAACAACCTAGGCCTTAAAGGCGGTGCCACTCTAGACGTGTGGGGCCTCCCTGCCAATACAACCGCCATGGACTTCCAGTCGAGCCAATCGGACATTTCCAGAGGCTGGGCTAGACTTCCTAACGGCCTACTGCTACAGTGGGGAACTGGACCGGGCCTGTCTGACGACACAAGGACGAATATTCAGCTTCCTGTTCCAGCAAGAATCTTGAACGTGCAGGTAACCGTAATGGGAACGTTCAACAACTCTATCGGCCCGGGCGCTTTCATGACTGACATGTGGAGCAACACAGGGTTCCGAGTTAGCTGTAACTGGGGTAACTGGTCTTATCCGTTCAACTGGTTCGCCATCACTTCCACCCTGTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)