Protein

View in Explore
Genbank accession
CCI88419.2 [GenBank]
Protein name
Phage tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,63
TF
Evidence GenBank
Probability 1,00
Protein sequence
MAGVNGRYDSVILGVSQQTPHDRRSGQMDGQDNFLSDPVRGLARRWGSKQTARQNVSSANLTDPVLTALAGKFMTKAFFCDGREYELIYAKQPTPETGGVFCYDRLNKKFLNVQYDGALANSIKNNGISSLVNIGRLMVMSVNNNKPAYTTQQVKPLKNTARPGVIWIRQGSYSRNYSVVITYTDGSQATVTHKTMGASYEGILDTSDIPWNKDNPGAYTKAVADRTNKYNTAVTQHIAASTEDIQPDTIAKKFRDKIATQLGIGNHIAATGSYVYFSAGANIANVTSTDGGDSTFMRTVVDSLDDIDKLSPWHYNGMVIRISPKKQSEKDSFYVQATTKDGSNFGEVAWKECPGQRFTPNNVFCIAWADGNTLFIGSSPESLNIMTTNKADCPRLEPSVVGDDKTSPVPYFLSGRTINYLGIFQDRLLVSSGAVVFASRPGDYFNWFRATVLNVEDNDPVEMYALGSEDDVIRWDSSFDRNHILHGEKNQYLLPGRSVLSPKNPSIQIMSAVEGTTGSEPQSSGSVVFFSKGATYGGSLHQIQMGASTDSSESYECSQQLDTYIDGRPCQILSVVSPYYVIMRLSNSLNKMYIYTYLDSMQGGERLFDSWSRWTWDSELGPCCGIAYFREELVKFSFRRGVGGVYIVADQMYLHSETSPDPYLDSMVNFGQYQEEIKQWPQALRDKLVVVYGREHSQNLMGTPYNELDKNMPELRLPENANRAWAGFNYDTLCRLTNPFIRDXDGKSIINGRLTLGNLTLSLDNSGGVEVFVETSGRRSRTVSFEGRLLTRITNKVGRVPLVDYGVKLPVYREVRECQVEFRALTWLPLTVSGIEWKGQYFNNLKRV
Physico‐chemical
properties
protein length:848 AA
molecular weight: 94523,12860 Da
isoelectric point:6,81604
aromaticity:0,10390
hydropathy:-0,41039

Domains

Domains [InterPro]
IPR058003
1–847
IPR058003
CCI88419.2
1 848
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage phiR8-01
[NCBI] 		1206556 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CCI88419.2 [NCBI]
Genbank nucleotide accession
HE956707.2 [NCBI]
CDS location
range 23865 -> 26411
strand +
CDS
ATGGCAGGTGTAAACGGACGCTATGACTCCGTTATCCTGGGGGTGTCCCAACAGACGCCCCATGACCGCCGAAGTGGTCAGATGGATGGACAGGATAACTTCCTAAGTGACCCGGTACGTGGCCTAGCCCGTCGCTGGGGTAGTAAGCAAACAGCAAGACAGAACGTGTCCTCGGCAAACCTGACGGACCCGGTACTGACTGCACTCGCAGGTAAATTCATGACTAAAGCCTTCTTCTGTGACGGGCGTGAGTATGAGCTTATCTATGCAAAACAGCCCACACCTGAGACGGGAGGCGTGTTCTGTTATGACCGCCTGAACAAGAAGTTTCTCAACGTTCAGTATGACGGTGCGCTGGCTAACAGCATTAAGAACAACGGAATTTCAAGCCTGGTAAACATCGGTCGCCTGATGGTTATGTCGGTCAATAACAACAAGCCTGCATACACCACACAACAGGTCAAGCCATTGAAGAATACAGCACGCCCCGGCGTTATCTGGATTCGACAAGGTTCGTATTCCCGTAACTATTCTGTGGTTATCACATACACAGACGGTAGCCAGGCAACAGTAACGCACAAGACTATGGGCGCATCATACGAGGGTATCCTGGACACCAGTGACATCCCGTGGAACAAAGATAACCCAGGCGCTTACACTAAGGCTGTGGCAGACCGCACGAACAAGTACAACACTGCGGTAACTCAACACATCGCAGCATCGACTGAGGACATCCAGCCGGACACTATCGCTAAGAAGTTCCGTGATAAGATTGCTACCCAATTGGGTATCGGAAACCACATCGCGGCTACTGGCTCGTATGTCTATTTCAGTGCTGGTGCCAACATCGCTAACGTAACCTCTACGGATGGCGGTGACAGTACGTTTATGCGTACAGTGGTTGACAGTCTGGATGACATCGACAAGCTATCGCCGTGGCATTACAACGGAATGGTTATCCGTATCTCACCTAAGAAACAAAGTGAGAAGGACAGCTTCTACGTTCAGGCCACCACTAAGGACGGCAGTAACTTCGGTGAGGTAGCCTGGAAGGAATGCCCAGGGCAGCGGTTTACGCCTAACAACGTATTCTGCATAGCGTGGGCTGACGGTAACACGCTGTTCATTGGCTCAAGTCCTGAGTCGCTAAACATCATGACTACCAACAAGGCTGACTGTCCTCGTTTAGAACCATCCGTGGTTGGTGACGATAAGACAAGCCCGGTCCCGTACTTCCTGAGTGGACGCACAATCAACTACCTGGGTATCTTCCAGGACAGGCTACTGGTTTCCAGTGGTGCAGTTGTGTTCGCTTCCCGGCCTGGTGACTACTTCAACTGGTTCCGTGCTACTGTGCTGAACGTTGAGGATAATGACCCGGTTGAAATGTATGCCCTCGGCAGTGAGGATGACGTGATTCGCTGGGACTCCAGCTTTGACCGTAACCACATCCTGCATGGCGAGAAGAACCAGTACCTGCTTCCTGGTCGCTCTGTGCTCTCACCTAAGAACCCTAGCATTCAGATTATGAGTGCGGTAGAGGGTACGACAGGCTCTGAGCCACAGTCTTCCGGTAGTGTGGTGTTCTTCTCCAAAGGCGCTACATACGGTGGCAGTCTGCATCAGATTCAAATGGGCGCATCTACGGATAGCTCGGAATCGTATGAGTGTAGCCAGCAGCTTGACACGTATATCGACGGCAGGCCATGCCAGATTCTTAGCGTGGTGTCTCCATACTACGTCATCATGCGACTGAGCAACAGCCTTAACAAGATGTACATTTACACCTACCTGGATTCAATGCAGGGCGGTGAGCGGCTGTTCGATAGCTGGTCACGATGGACGTGGGACAGCGAGTTAGGCCCGTGCTGTGGCATTGCGTACTTCCGGGAAGAACTGGTTAAGTTCTCATTCCGGCGCGGTGTCGGTGGTGTCTACATCGTAGCAGACCAGATGTACCTGCATTCAGAAACATCACCAGACCCTTACCTTGACTCAATGGTTAACTTCGGTCAGTACCAGGAAGAGATTAAGCAGTGGCCCCAGGCACTACGTGACAAGCTAGTTGTCGTGTACGGTCGTGAGCACTCGCAGAACCTGATGGGTACGCCGTACAATGAGTTGGATAAGAACATGCCTGAGCTTCGTCTACCTGAGAATGCTAACAGGGCATGGGCTGGTTTCAATTACGATACTCTGTGCAGGCTTACTAACCCGTTCATTCGTGACYGGGACGGTAAGAGCATCATCAACGGACGCCTGACGCTGGGTAACTTGACACTGAGCCTGGATAACTCCGGTGGTGTTGAAGTMTTCGTTGAGACGAGTGGACGCCGTAGCAGGACCGTTAGCTTTGAGGGCAGGCTGTTAACCCGAATCACCAACAAAGTGGGACGTGTCCCGCTGGTCGACTACGGCGTTAAATTGCCCGTGTACCGCGAGGTGCGCGAATGTCAGGTAGAGTTCCGTGCATTAACCTGGTTGCCATTGACGGTTTCCGGGATTGAGTGGAAGGGACAATACTTTAACAACCTCAAGAGGGTATAA

Tertiary structure

PDB ID
a48894ffb6f12e40533d33bae889fe3ab95504808499321f7150ad517c84d737
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8917
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of five bacteriophages specific for Yersinia species Skurnik,M., Nawaz,A., Happonen,L., Butcher,S. and Mattinen,L. 2012 — GenBank