Phage RBP Database

Genbank accession

XYM57508.1 [GenBank]

Protein name

short tail fiber protein

RBP type

TF

Evidence Phold

Probability 1,00

TF

Evidence RBPdetect

Probability 0,86

TF

Evidence RBPdetect2

Probability 0,47

Protein sequence

MSYTTTWSVSTYASADNVQFGHWYSQRNPKLDGMTIGTVMSIFRDKTGNWGTLDGDLDSRFPGWIECDGRTVSAQDYPDLFDAIGTTYGGTATKTLSGNTYTYSGNFVLPNYHNRKLFGIGNVDGNSPSSPTIVTYKGPDVTQGASGDSTTVGSQGGNWFIKKIDGIGTPPDEQVFPGITQPDGQVVAFQLWQNEDLDPAAYVTKAIGEWVQRTEGGSPDYWNTVNDFQEADVTITGGSGTGLQLRVRAEAQLNDAGTDPDDTRFKIMTVLNPGENYQVGDTMDITFPSPAPGGGTITFSPGLRVLTVTDSFTTNTDGRFFKLGSLTTTGIDSISGEIDYEITGNLQADIGPLNPTPTIPAQHTHDIITAQVDQIGVGYVAWATPAFYQIGTGDIGSSTYSQIGYNSVVSPGGEVNFSFNNYWAGDVQNSIPGLASGGNASAGIGVNEVQGNVVVYNPGTTRTHTHYMSQSDFGDSENVYGWGNVDGGGTAAGGMATNDTTTINFSQTDLALTANQADFELNLSKTVVPTPSMVPESTVPLLTKYHRVKYIIKAY

Physico‐chemical properties

protein length:	555 AA
molecular weight:	59203,13440 Da
isoelectric point:	4,32911
aromaticity:	0,10270
hydropathy:	-0,35117

Domain architecture

XYM57508.1

1 555 aa

ATT 27–112 · STR 113–158 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR037053
ATT

IPR037053

IPR011083
ATT

IPR011083

SSF88874
STR

SSF88874

XYM57508.1

1555 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1413
STR

DC_1413 DC_0333

XYM57508.1

1555 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR037053	ATT	IPR037053	27	112	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	62	95	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
SSF88874	STR	SSF88874	62	158	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits

Proteins with similar domain architecture

Phage

Synechococcus phage Sf-CH1b [NCBI] · taxon 3413213

Viruses

Host No host information

Genbank protein accession

XYM57508.1 [NCBI]

Genbank nucleotide accession

PV340850.1 [NCBI]

CDS location

range 43136 -> 44803
strand +

CDS

ATGTCATATACTACTACTTGGTCTGTATCAACCTACGCTAGTGCTGATAATGTACAGTTTGGTCATTGGTACAGTCAGCGAAATCCCAAATTAGATGGAATGACAATCGGAACAGTTATGTCTATCTTTAGAGATAAGACAGGTAACTGGGGTACTCTTGATGGAGATTTAGATTCTAGATTTCCTGGATGGATTGAGTGTGATGGTAGAACGGTAAGCGCACAAGATTATCCAGATTTATTTGATGCTATTGGCACAACATATGGTGGCACTGCAACAAAAACTCTAAGTGGCAACACTTACACATATTCTGGTAACTTTGTATTACCAAACTATCACAACAGAAAATTATTTGGTATTGGAAATGTAGATGGCAACTCTCCATCTTCTCCTACTATTGTTACTTACAAGGGTCCTGATGTAACTCAAGGTGCTAGTGGTGACTCTACTACTGTTGGATCACAAGGTGGTAACTGGTTCATTAAAAAAATTGATGGAATTGGTACTCCTCCCGATGAACAGGTATTCCCAGGTATTACACAACCAGATGGTCAAGTTGTTGCATTTCAGTTGTGGCAGAATGAAGACTTGGACCCTGCTGCATATGTAACCAAAGCAATTGGTGAATGGGTACAAAGAACTGAGGGTGGTTCTCCAGACTATTGGAATACAGTTAATGATTTTCAAGAAGCAGATGTTACTATTACTGGTGGTAGTGGTACTGGATTGCAACTTAGAGTAAGAGCAGAAGCACAATTAAATGATGCTGGTACTGATCCAGATGACACTAGATTCAAAATTATGACAGTATTGAATCCTGGTGAAAACTATCAGGTTGGTGACACAATGGATATCACATTTCCATCTCCTGCTCCTGGTGGTGGTACTATTACATTCAGTCCTGGTCTCAGAGTATTGACTGTAACAGATTCATTTACCACCAATACTGATGGTAGATTTTTCAAGTTAGGATCTCTTACAACTACTGGTATTGATAGTATCTCTGGTGAAATTGATTATGAAATTACTGGTAACTTACAGGCAGATATTGGACCACTAAATCCAACTCCAACTATTCCAGCGCAGCACACTCATGATATTATTACAGCACAAGTAGACCAAATTGGTGTTGGATATGTCGCATGGGCAACCCCTGCTTTCTATCAAATTGGTACAGGAGACATTGGTTCTTCTACTTACTCACAAATTGGTTATAATAGTGTAGTATCTCCTGGTGGTGAGGTTAACTTCTCATTCAACAACTACTGGGCAGGTGATGTACAGAATAGCATTCCTGGTCTTGCAAGTGGCGGTAATGCTAGTGCTGGTATTGGTGTGAATGAAGTTCAAGGTAATGTGGTTGTGTATAACCCAGGCACCACGAGAACACATACACATTACATGTCACAATCAGACTTTGGTGATTCTGAGAATGTTTATGGATGGGGTAATGTTGATGGTGGTGGTACTGCGGCAGGTGGTATGGCAACCAATGATACTACGACTATTAATTTTTCTCAAACAGATCTAGCATTGACTGCCAACCAGGCAGATTTTGAGTTAAACTTATCTAAAACAGTTGTTCCAACACCTTCTATGGTTCCAGAATCGACTGTACCACTGTTGACTAAATACCATCGAGTCAAGTATATTATTAAAGCATACTGA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)