Protein

View in Explore
Genbank accession
XYM57508.1 [GenBank]
Protein name
tail collar domain-containing protein
RBP type
TF
Evidence RBPdetect
Probability 0,86
TF
Evidence Phold
Probability 1,00
Protein sequence
MSYTTTWSVSTYASADNVQFGHWYSQRNPKLDGMTIGTVMSIFRDKTGNWGTLDGDLDSRFPGWIECDGRTVSAQDYPDLFDAIGTTYGGTATKTLSGNTYTYSGNFVLPNYHNRKLFGIGNVDGNSPSSPTIVTYKGPDVTQGASGDSTTVGSQGGNWFIKKIDGIGTPPDEQVFPGITQPDGQVVAFQLWQNEDLDPAAYVTKAIGEWVQRTEGGSPDYWNTVNDFQEADVTITGGSGTGLQLRVRAEAQLNDAGTDPDDTRFKIMTVLNPGENYQVGDTMDITFPSPAPGGGTITFSPGLRVLTVTDSFTTNTDGRFFKLGSLTTTGIDSISGEIDYEITGNLQADIGPLNPTPTIPAQHTHDIITAQVDQIGVGYVAWATPAFYQIGTGDIGSSTYSQIGYNSVVSPGGEVNFSFNNYWAGDVQNSIPGLASGGNASAGIGVNEVQGNVVVYNPGTTRTHTHYMSQSDFGDSENVYGWGNVDGGGTAAGGMATNDTTTINFSQTDLALTANQADFELNLSKTVVPTPSMVPESTVPLLTKYHRVKYIIKAY
Physico‐chemical
properties
protein length:555 AA
molecular weight: 59203,13440 Da
isoelectric point:4,32911
aromaticity:0,10270
hydropathy:-0,35117

Domains

Domains [InterPro]
IPR037053
27–112
IPR037053
IPR011083
62–95
IPR011083
SSF88874
62–158
SSF88874
XYM57508.1
1 555
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Sf-CH1b
[NCBI] 		3413213 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM57508.1 [NCBI]
Genbank nucleotide accession
PV340850 [NCBI]
CDS location
range 43136 -> 44803
strand +
CDS
ATGTCATATACTACTACTTGGTCTGTATCAACCTACGCTAGTGCTGATAATGTACAGTTTGGTCATTGGTACAGTCAGCGAAATCCCAAATTAGATGGAATGACAATCGGAACAGTTATGTCTATCTTTAGAGATAAGACAGGTAACTGGGGTACTCTTGATGGAGATTTAGATTCTAGATTTCCTGGATGGATTGAGTGTGATGGTAGAACGGTAAGCGCACAAGATTATCCAGATTTATTTGATGCTATTGGCACAACATATGGTGGCACTGCAACAAAAACTCTAAGTGGCAACACTTACACATATTCTGGTAACTTTGTATTACCAAACTATCACAACAGAAAATTATTTGGTATTGGAAATGTAGATGGCAACTCTCCATCTTCTCCTACTATTGTTACTTACAAGGGTCCTGATGTAACTCAAGGTGCTAGTGGTGACTCTACTACTGTTGGATCACAAGGTGGTAACTGGTTCATTAAAAAAATTGATGGAATTGGTACTCCTCCCGATGAACAGGTATTCCCAGGTATTACACAACCAGATGGTCAAGTTGTTGCATTTCAGTTGTGGCAGAATGAAGACTTGGACCCTGCTGCATATGTAACCAAAGCAATTGGTGAATGGGTACAAAGAACTGAGGGTGGTTCTCCAGACTATTGGAATACAGTTAATGATTTTCAAGAAGCAGATGTTACTATTACTGGTGGTAGTGGTACTGGATTGCAACTTAGAGTAAGAGCAGAAGCACAATTAAATGATGCTGGTACTGATCCAGATGACACTAGATTCAAAATTATGACAGTATTGAATCCTGGTGAAAACTATCAGGTTGGTGACACAATGGATATCACATTTCCATCTCCTGCTCCTGGTGGTGGTACTATTACATTCAGTCCTGGTCTCAGAGTATTGACTGTAACAGATTCATTTACCACCAATACTGATGGTAGATTTTTCAAGTTAGGATCTCTTACAACTACTGGTATTGATAGTATCTCTGGTGAAATTGATTATGAAATTACTGGTAACTTACAGGCAGATATTGGACCACTAAATCCAACTCCAACTATTCCAGCGCAGCACACTCATGATATTATTACAGCACAAGTAGACCAAATTGGTGTTGGATATGTCGCATGGGCAACCCCTGCTTTCTATCAAATTGGTACAGGAGACATTGGTTCTTCTACTTACTCACAAATTGGTTATAATAGTGTAGTATCTCCTGGTGGTGAGGTTAACTTCTCATTCAACAACTACTGGGCAGGTGATGTACAGAATAGCATTCCTGGTCTTGCAAGTGGCGGTAATGCTAGTGCTGGTATTGGTGTGAATGAAGTTCAAGGTAATGTGGTTGTGTATAACCCAGGCACCACGAGAACACATACACATTACATGTCACAATCAGACTTTGGTGATTCTGAGAATGTTTATGGATGGGGTAATGTTGATGGTGGTGGTACTGCGGCAGGTGGTATGGCAACCAATGATACTACGACTATTAATTTTTCTCAAACAGATCTAGCATTGACTGCCAACCAGGCAGATTTTGAGTTAAACTTATCTAAAACAGTTGTTCCAACACCTTCTATGGTTCCAGAATCGACTGTACCACTGTTGACTAAATACCATCGAGTCAAGTATATTATTAAAGCATACTGA

Tertiary structure

PDB ID
82c49eb667c2386f44989f5e57f28888a7a68d43b19529de67e8e084633f0a57
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,5921
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50