Phage RBP Database

Genbank accession

YP_009293130.1 [GenBank]

Protein name

putative virion structural protein

RBP type

TSP

Evidence DepoScope

Probability 0,98

TSP

Evidence RBPdetect2

Probability 0,40

Protein sequence

MALKLKWKNPNVGATTIDIYRGDTINVSLTTPLVTLTNGELSWVDTTALFGKTYYYVWAVNTANDRVVSRPQKIEVNDRKGPGPNLLLHGNEGYGFFGVVPAADFVNSGAILAVAKNLSGVPQATVYPTWYKFIRKGKVLFVPNQSFGDTTWQALYNAGFVYGVNNTGPGGAGTVNQLTTFELNGDLFLVRATKAFPEEVPWTDGLGSYDLDTMPVMANVYAEYEDLLYPMAAHSPLRKRMVTVGDENLNSVLPPLYNTVSRTVIGVCCQDYNNNLVLQRGVGYNSYGQSSHNRNTLRACNRRTKTDTCVWWPVVEYIGRVGEVDLTKLGV

Physico‐chemical properties

protein length:	331 AA
molecular weight:	36516,99600 Da
isoelectric point:	8,21303
aromaticity:	0,11178
hydropathy:	-0,16284

Domain architecture

YP_009293130.1

1 331 aa

STR 2–73 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR013783
STR

IPR013783

YP_009293130.1

1331 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0638
ATT

DC_0638

YP_009293130.1

1331 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR013783	STR	IPR013783	2	73	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_009293130.1

1 331 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	76	76	0,6392
Central domain	77	275	200	0,0827
C-terminal	276	331	55	0,8123

Note: Constraints were applied during segmentation.
Fixed 26 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Erwinia phage vB_EamM_Huxley [NCBI] · taxon 1883373

Uroviricota Caudoviricetes Chimalliviridae Machinavirus machina

Host No host information

Genbank protein accession

YP_009293130.1 [NCBI]

Genbank nucleotide accession

NC_031127 [NCBI]

CDS location

range 131812 -> 132807
strand +

CDS

ATGGCCTTAAAACTAAAATGGAAGAACCCGAATGTCGGGGCGACCACCATTGACATTTATCGTGGCGATACGATTAACGTCAGTCTCACCACACCACTGGTGACATTAACGAACGGCGAGCTGTCGTGGGTAGATACGACGGCATTGTTTGGAAAAACGTATTACTACGTCTGGGCCGTGAATACCGCAAACGACCGCGTAGTCAGTCGCCCACAGAAAATTGAGGTTAACGACCGTAAAGGCCCTGGACCCAACTTGCTGTTGCATGGTAACGAAGGCTACGGTTTCTTTGGGGTGGTTCCAGCCGCAGATTTTGTTAACAGCGGCGCTATCTTGGCCGTAGCGAAAAATCTCAGTGGTGTCCCACAAGCCACCGTGTATCCGACTTGGTATAAGTTCATTCGCAAAGGCAAGGTTCTGTTTGTACCAAACCAAAGCTTTGGCGATACCACTTGGCAAGCACTGTATAACGCGGGCTTTGTTTACGGGGTTAACAATACGGGACCGGGCGGTGCGGGAACCGTTAACCAATTAACAACGTTTGAACTGAACGGCGACCTGTTCTTAGTCCGGGCAACAAAAGCGTTTCCTGAGGAAGTGCCGTGGACGGACGGACTGGGTTCGTACGATCTTGATACCATGCCTGTGATGGCAAATGTGTACGCCGAATACGAAGACCTGCTGTATCCGATGGCCGCACACTCCCCGCTGCGTAAACGGATGGTAACGGTTGGAGATGAAAATCTCAACAGCGTCCTACCGCCCCTGTATAACACCGTCTCTCGTACTGTGATTGGGGTCTGCTGCCAGGACTACAACAACAACTTAGTGCTCCAGCGCGGGGTTGGCTATAACTCATACGGCCAATCCTCACACAACCGCAACACGCTGCGTGCCTGCAACCGTCGTACCAAGACCGATACCTGCGTCTGGTGGCCGGTGGTGGAATACATTGGGCGTGTAGGTGAAGTAGACTTGACAAAATTAGGAGTGTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)