Phage RBP Database

Genbank accession

YP_009018648.1 [GenBank]

Protein name

tail protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,85

TF

Evidence RBPdetect2

Probability 0,96

Protein sequence

MTDLPKIYGSKGGSQKQHTPVEQEDNLISLNKIKVLLAVADGEVDSSFSLKDLYLADVPVQNQDNSFNYEGVTAEFRPGTQSQDYIAGLDGAASEIQVSREINNDTPYIIAVNNSQLSAIRVKLFWPRLVKQEENGDLNGTTCEYAIDLSVNGAAYTEYTRGVANGKTTTGYDRSIRVNLPAEFSSALVRIRKLTPDSTSSTLVNGMQITTYQEVIDAKFRYPLTALVYVEFSSDLFPNGIPTIAIKKKWKIIRVPTNYNPETRTYSGTWDGTFKMAWSDNPAWVLYDLVVSQRYGLDQRELGVEIDKWGLYEAAQFCDQMVPDGKGGMEPRYTCNVVIQQKVEAYQLIRDICSIFRGLTFYDGEQIGIVVDRPRQPSYVFTNDNVVDGLFNRTFSSDKSLYTTANVQFDDVENNYQQDVEPVFDLEATRRFGYNPVDLTAIGCVRRSEANRRGRWLLKTNLRSETVTFTTGLEGMIPMIGDVIAVNDQAWSSNYTLNLSGRIVEATGLQVFVPFAIDADPGDRILINKPDGSPEYRTIASVSADKLTLELNTAFSFTPQPDTVFAIDKQNLALQQYVVTGIQKANTDGEDSFQYSITAVQYDPNKYDEIDYGVNIDDRPTSIVDPDRILPPENITVTSYSKVVQGLSVETMVIGYDKVQYAKTYNVQWRKNNGNWINVPETANTEVDIEGIYAGIYDVRVRAVTDQKSVSAWSEITTVSLTGKIGEPSAPPVITASDDEVFGIRVKWGFPTDSADTAYTEIQQVPDNGYGTYNPENASLLTLVPYPQYEYWHTTLPAGNVRWYRARIIDRIGNVSPWTDFVRGMASDDVSAIIGDIKVDIENSDGYKYLLQNAIDANTDIQNQAEAIIENALANDTDVRVMTKENLNRKAEYRQAVSLIADETQARVDALTELKAQIDDEIVGQITTIETALATETEARATADTALTAQLGENTAALNQKLDSYATVEGVGVQYGVKLGLKYNGVEYGAGMSMELTGSGGNVRSQFIFDANRFAISNGISSGSGQWSLPFVVENNQVFIQSAVIQDGSITNAKIGNRIQSNNYVAGSAGWAIDKSGFAELSNATVRGSLYANNGNFAFNGTSNTVQINGNGITVNLPGGGRVVVGVWN

Physico‐chemical properties

protein length:	1129 AA
molecular weight:	124516,13520 Da
isoelectric point:	4,58005
aromaticity:	0,09477
hydropathy:	-0,31453

Domain architecture

YP_009018648.1

1 1129 aa

ATT 93–218 · ATT 342–489 · STR 630–725 · RBD 958–1096 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053171
Unmapped

IPR053171 Coil IPR015406

IPR055385
ATT

IPR055385 IPR032876 IPR013783 Coil

IPR003961
STR

IPR003961

IPR003961
STR

IPR003961

IPR036116
STR

IPR036116

YP_009018648.1

11129 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0014
STR

DC_0014

YP_009018648.1

11129 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	7	883	InterPro	Viral Tip Attachment Protein	-	-	-	-
IPR055385	ATT	DC_0360	93	218	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	342	489	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR013783	STR	IPR013783	630	724	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR003961	STR	DC_0003	631	719	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR003961	STR	DC_0003	631	725	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR036116	STR	IPR036116	660	719	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
Coil	Unmapped	-	851	871	Coils	Coil	-	-	-	-
Coil	Unmapped	-	901	921	Coils	Coil	-	-	-	-
IPR015406	RBD	DC_0135	958	1096	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_009018648.1

1 1129 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	513	513	0,9420
Central domain	514	1061	549	0,0380
C-terminal	1062	1129	67	0,5626

Note: Constraints were applied during segmentation.
Fixed 27 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Escherichia phage phiEB49 [NCBI] · taxon 1048207

Uroviricota Caudoviricetes Drexlerviridae Lindendrivevirus Lindendrivevirus EB49

Host

Escherichia coli CFT073 [NCBI] · taxon 199310

Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia

Genbank protein accession

YP_009018648.1 [NCBI]

Genbank nucleotide accession

NC_023743 [NCBI]

CDS location

range 21032 -> 24421
strand -

CDS

ATGACCGATTTGCCAAAGATTTATGGAAGCAAGGGTGGAAGCCAGAAGCAGCACACGCCTGTAGAGCAAGAAGATAACCTGATTTCACTTAACAAGATTAAGGTTCTGTTGGCGGTTGCTGATGGTGAGGTTGACTCAAGTTTCTCACTAAAGGATCTCTACCTTGCTGATGTTCCCGTACAGAACCAGGACAACTCATTCAACTACGAAGGTGTAACGGCTGAGTTTCGCCCTGGCACTCAATCCCAAGATTACATCGCAGGACTAGATGGTGCTGCGTCGGAGATTCAGGTTAGCCGTGAGATTAACAACGATACGCCTTACATCATCGCAGTTAACAACAGTCAGTTATCAGCAATCCGAGTCAAGCTGTTCTGGCCTCGACTAGTTAAACAAGAAGAGAATGGAGATTTAAATGGTACAACATGCGAATATGCAATCGATTTATCAGTTAATGGCGCAGCGTACACGGAATATACCAGAGGCGTGGCTAACGGTAAAACTACAACAGGTTACGACCGCAGTATCAGGGTTAACTTACCAGCAGAGTTTAGCAGCGCTCTTGTTCGTATTAGGAAGTTAACTCCGGACTCAACAAGCAGCACACTGGTTAACGGGATGCAGATTACAACCTATCAGGAAGTAATCGACGCTAAATTCCGCTACCCTCTTACGGCTCTTGTTTACGTTGAGTTCAGCTCTGACCTTTTCCCAAACGGCATCCCAACGATAGCTATTAAGAAGAAGTGGAAGATTATCCGTGTACCAACAAACTACAACCCAGAGACTCGTACTTATAGCGGAACCTGGGATGGCACTTTTAAAATGGCATGGTCTGATAATCCAGCCTGGGTTTTATATGACCTGGTGGTTAGTCAGCGTTACGGCCTGGACCAGCGGGAGCTTGGTGTAGAGATTGATAAGTGGGGCCTGTATGAAGCTGCGCAATTCTGTGACCAGATGGTTCCGGACGGCAAAGGCGGGATGGAGCCGAGATATACTTGTAACGTTGTCATTCAGCAGAAAGTGGAAGCTTATCAGCTTATTCGTGACATCTGTTCTATTTTCCGAGGTCTAACCTTCTATGACGGTGAGCAAATCGGGATTGTTGTAGACAGGCCGCGCCAGCCTAGCTATGTATTCACCAATGATAACGTTGTTGATGGATTGTTTAACAGGACATTCTCTAGTGATAAGTCTCTTTACACGACTGCAAACGTTCAGTTTGATGACGTAGAGAATAACTATCAGCAAGATGTCGAGCCAGTATTTGACCTTGAGGCGACTCGTAGATTTGGTTACAACCCTGTAGACCTGACCGCAATTGGCTGCGTAAGGCGTAGTGAGGCTAACCGTCGAGGTAGATGGTTGCTGAAAACAAACCTTCGCAGTGAAACGGTAACTTTCACAACTGGCCTGGAAGGCATGATTCCTATGATTGGTGATGTAATTGCTGTCAATGACCAGGCGTGGTCTAGCAACTACACATTGAACCTTTCGGGTCGAATCGTTGAAGCTACAGGATTACAGGTTTTTGTTCCGTTCGCTATTGATGCTGACCCTGGCGACAGGATTTTAATCAACAAGCCAGATGGAAGCCCGGAGTACAGGACTATCGCTTCCGTATCTGCTGATAAGCTTACGCTTGAACTGAATACAGCATTCAGCTTCACGCCCCAGCCTGATACGGTATTCGCAATCGACAAGCAGAATCTTGCGTTGCAGCAATATGTGGTTACCGGGATTCAAAAAGCTAACACGGACGGCGAGGACTCATTCCAGTACAGCATCACAGCTGTTCAGTATGACCCTAACAAGTACGATGAGATCGACTACGGAGTAAACATCGATGACAGGCCAACAAGCATCGTTGACCCTGACAGGATTTTACCACCTGAAAATATCACCGTTACTAGCTACAGTAAGGTAGTTCAGGGATTAAGCGTTGAGACCATGGTTATCGGTTACGACAAGGTGCAGTATGCGAAAACATACAACGTACAATGGCGTAAGAATAACGGAAACTGGATTAACGTTCCCGAGACGGCTAACACTGAAGTTGATATTGAAGGTATCTACGCTGGCATTTACGACGTCAGGGTTCGTGCTGTAACTGACCAAAAATCAGTATCGGCATGGTCTGAAATAACGACAGTCAGCTTGACTGGTAAGATTGGAGAGCCATCAGCGCCGCCTGTAATTACCGCGTCTGATGATGAGGTTTTCGGGATTAGGGTTAAGTGGGGGTTTCCTACTGATTCAGCCGATACTGCGTACACTGAGATTCAGCAGGTTCCTGATAATGGTTACGGTACATACAATCCAGAAAACGCATCACTGCTTACGCTGGTTCCTTACCCTCAATATGAGTACTGGCACACAACTCTTCCAGCAGGAAACGTGAGGTGGTACAGGGCGAGGATTATTGACAGGATAGGTAACGTATCTCCATGGACTGATTTTGTCAGAGGCATGGCATCCGATGATGTAAGTGCGATCATTGGCGATATAAAGGTTGATATCGAAAACTCTGATGGGTACAAATATCTTCTCCAGAACGCTATTGATGCAAATACTGACATCCAGAATCAGGCTGAGGCAATTATAGAGAACGCTCTAGCAAACGATACTGATGTACGCGTTATGACAAAGGAGAATCTTAACAGGAAGGCTGAATATCGTCAGGCCGTGAGTTTGATTGCTGATGAAACTCAAGCCCGTGTAGACGCCCTCACGGAGCTCAAAGCGCAGATTGATGATGAGATTGTTGGACAGATTACGACAATTGAAACCGCTCTAGCTACGGAGACGGAAGCAAGGGCTACGGCAGATACCGCATTAACTGCGCAACTAGGTGAGAATACAGCGGCGTTAAATCAGAAGCTTGATTCTTACGCTACAGTTGAAGGCGTTGGTGTTCAGTACGGCGTTAAGCTTGGCCTGAAGTACAATGGAGTTGAGTATGGCGCCGGTATGAGCATGGAGCTAACTGGAAGTGGTGGAAACGTTCGTAGTCAGTTCATTTTCGATGCTAACAGGTTCGCAATCAGCAACGGCATTAGCTCTGGTTCCGGTCAGTGGTCGCTGCCTTTCGTTGTCGAGAATAACCAGGTGTTCATTCAGAGCGCGGTGATTCAGGATGGTTCAATTACTAACGCTAAGATTGGTAACAGGATTCAATCAAACAACTATGTTGCAGGTAGCGCTGGATGGGCAATTGATAAATCTGGTTTTGCTGAGTTAAGTAACGCCACTGTTCGCGGTAGCCTGTACGCTAACAATGGTAACTTCGCATTTAACGGAACAAGTAATACTGTTCAGATTAACGGTAACGGAATCACTGTTAACTTACCTGGCGGAGGAAGGGTTGTAGTTGGAGTTTGGAATTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)