Phage RBP Database

Genbank accession

YP_009613842.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,90

Protein sequence

MEFSIVANPIFIPIAFAANGIKNLIQKVRQVGQDPEDFTWNEGAPLITMTKIEDGGKAPKGQDFNGVLNALSEHVIYGQNGNRYTWSQDVVDEFGGYALGAIIQSDDTTKEFRSLVANNTVNPNNGLGGAWEVYSGQGSIPTATSTTAGITKVLNVLNSNDVGSALSAAQGKALKDIFDKFSLNTGTNGELKIPIGNLTFVAKWGKTPNQDVPSSGSPVSVSFATAFPNACLNIQLTPDATGGTNPNAFASVLTKSRTGFTAYLYEYTPTTQNVGISWLAIGY

Physico‐chemical properties

protein length:	283 AA
molecular weight:	29984,12200 Da
isoelectric point:	4,92364
aromaticity:	0,09541
hydropathy:	-0,14523

Domain architecture

YP_009613842.1

1 283 aa

STR 153–182 · RBD 184–283

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR054500
STR

IPR054500 G3DSA:2.60.40.3940

IPR037221
RBD

IPR037221

IPR054075
RBD

IPR054075

YP_009613842.1

1283 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0979
STR

DC_0979

YP_009613842.1

1283 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR054500	STR	DC_0514	153	182	InterPro cluster	Phage tail fiber repeat	C-terminal	Medium	Text match	81 proteins / 83 hits
G3DSA:2.60.40.3940	RBD	G3DSA:2.60.40.3940	184	283	Merged direct domain	G3DSA:2.60.40.3940	C-terminal	Low	Positional only	77 proteins / 77 hits
IPR037221	RBD	IPR037221	192	282	Merged direct domain	H-type lectin domain superfamily	C-terminal	Low	Positional only	8 proteins / 8 hits
IPR054075	RBD	DC_0717	203	283	InterPro cluster	Putative tail fiber protein gp53-like, C-terminal	C-terminal	Low	Positional only	174 proteins / 174 hits

Proteins with similar domain architecture

Phage

Acinetobacter phage AB1 [NCBI] · taxon 889876

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Acinetobacter baumannii [NCBI] · taxon 470

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales

Genbank protein accession

YP_009613842.1 [NCBI]

Genbank nucleotide accession

NC_042028 [NCBI]

CDS location

range 37264 -> 38115
strand -

CDS

ATGGAGTTTTCTATAGTGGCTAATCCTATATTTATCCCGATAGCATTTGCTGCTAACGGAATTAAGAATCTTATTCAAAAGGTTCGGCAAGTCGGACAAGATCCAGAAGATTTTACATGGAATGAAGGCGCGCCCTTAATTACTATGACAAAAATCGAAGATGGCGGTAAAGCGCCAAAAGGACAAGATTTTAACGGGGTGCTTAATGCCCTGTCTGAGCATGTCATCTATGGTCAAAATGGCAACCGTTATACATGGTCGCAGGATGTTGTGGATGAATTTGGCGGCTATGCATTAGGCGCAATTATTCAGTCTGATGACACTACCAAAGAATTTAGAAGCCTTGTAGCCAACAATACGGTAAACCCGAATAATGGGCTTGGTGGGGCTTGGGAAGTTTACAGCGGGCAAGGAAGCATTCCGACTGCAACAAGTACAACCGCAGGCATTACGAAGGTTTTAAATGTCTTAAATAGTAATGATGTTGGATCTGCTTTAAGTGCTGCTCAAGGCAAAGCTTTGAAAGACATCTTTGATAAGTTTTCGCTTAATACTGGAACAAATGGAGAATTGAAAATACCTATTGGTAATTTGACATTTGTTGCTAAATGGGGGAAAACCCCAAATCAAGATGTTCCCTCAAGTGGATCGCCTGTTAGTGTATCATTTGCAACAGCATTCCCGAATGCATGCTTAAACATACAATTAACACCAGACGCAACTGGCGGCACCAATCCAAATGCATTTGCATCGGTTTTAACAAAAAGTCGAACGGGATTTACCGCTTACTTATATGAATACACACCAACAACACAGAATGTTGGTATTTCGTGGCTTGCAATAGGATACTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)