Protein

View in Explore
Genbank accession
YP_003344958.1 [GenBank]
Protein name
membrane protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,46
Protein sequence
MGAGILIDYNDGRPRMEITAGLRAPAYCTSFNQRAQSNKTLTINTPLTAGSQVVVALTRPVEVIEVFDQTLVIPDPFYVTSVTRNGNSGITLRGEDAYGAYSGLPQWAGVIMEVLPVGSRNAGLLVANSTDFTAISNVAKLMTCRYAKRVRVNGSMALPVSGVPFARWDDGNVSVGFDGGSIIVRNASYGGIDDVAASVDMDLVIFNNTPPTPGAGITMTNSQNQVTFSTVNKPFVYDRTINIGTSDQNIGNSLIQLSYTGALIQNNGGYNHVRMNGIRMAGNNVRVAKNRVIGNYSRQQFQMPGKNIAVPTPLLVIPNMY
Physico‐chemical
properties
protein length:321 AA
molecular weight: 34433,75510 Da
isoelectric point:9,24607
aromaticity:0,07477
hydropathy:-0,03738

Domains

View on InterPro
Domain architecture
YP_003344958.1
1 321 aa
STR 4–297 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_003344958.1
1 321 aa
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,4861
Central domain 11 203 194 0,0180
C-terminal 204 321 117 0,9977
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Sodalis phage SO-1 [NCBI] · taxon 673375
Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes
Host
Sodalis glossinidius [NCBI] · taxon 63612
cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Coding sequence (CDS)

Genbank protein accession
YP_003344958.1 [NCBI]
Genbank nucleotide accession
NC_013600 [NCBI]
CDS location
range 20482 -> 21447
strand -
CDS
ATGGGTGCTGGAATACTTATCGACTACAACGACGGAAGACCGCGCATGGAGATCACCGCAGGGCTTCGCGCGCCAGCATACTGCACCAGCTTTAACCAGCGGGCACAGTCCAACAAGACGCTAACCATTAACACCCCTCTTACGGCGGGGTCACAGGTCGTCGTCGCGCTCACTCGCCCGGTAGAAGTGATTGAGGTATTCGACCAGACCCTGGTAATACCCGATCCGTTTTACGTTACGTCGGTTACGCGCAACGGTAATAGCGGAATAACCCTGCGCGGGGAGGATGCGTATGGCGCGTACTCCGGTTTACCACAATGGGCGGGCGTCATAATGGAAGTGCTGCCGGTTGGGTCGCGTAACGCGGGTTTACTGGTGGCGAACTCGACGGACTTCACCGCAATATCCAACGTGGCGAAGCTGATGACCTGCAGATACGCAAAGCGCGTGCGCGTCAACGGGAGTATGGCCTTGCCTGTTAGTGGTGTTCCGTTCGCCCGCTGGGATGACGGCAACGTATCAGTTGGCTTCGATGGCGGAAGTATTATCGTACGCAACGCGTCCTACGGGGGCATCGACGATGTGGCGGCTTCGGTGGACATGGACCTGGTAATATTCAACAATACACCCCCCACACCAGGGGCTGGGATCACCATGACGAATAGCCAGAATCAGGTCACGTTCTCGACGGTGAACAAGCCGTTCGTATATGACCGCACTATTAACATCGGAACGAGCGACCAGAATATTGGAAACAGCCTGATCCAGCTTTCATACACCGGCGCGCTGATTCAGAACAACGGGGGCTATAACCACGTTCGAATGAACGGGATACGCATGGCGGGTAATAATGTGCGCGTCGCTAAAAACCGCGTCATCGGCAACTACTCACGGCAGCAATTCCAGATGCCAGGTAAAAATATTGCCGTACCTACCCCGCTACTCGTCATCCCGAATATGTATTAA

Genome Context

Tertiary structure

YP_003344958.1
ESMFold structure
Source ESMFold
pLDDT 85.9
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Molecular characterization of an active bacteriophage infecting the tsetse endosymbiont Sodalis glossinidius Young,S.A., Darby,A.C. and Welburn,S.C. 2005-07 — GenBank