Protein

View in Explore
Genbank accession
ALA46459.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
TF
Evidence Phold
Probability 1,00
Protein sequence
MYSVQIAVSDGTLARISLSIEYFEKDDITLYRNLETTPLVLGTDWQWDGDTTINLLTNTPVTDGEYITVRRNTNIDRAFNIYDGGAAFSRDTLDENFRQMIYLAQEFTEGNGLTGLFFPLDMHGFKITNLGDGTDPKDAVNKGQLDVVDQRVTNLEESFVTNTVSYPWYELTTVVKDTFSPPFVFDKAAVFLNGICQTLGYSYVVVSNQILLADPVPVGTMFFARLGEDVGLDPDYATADQLAAAIVDRVAEDAALQTQVDSKAAKGVNSDITQITGLTTPLSTAQGGTGNNTGTALTATKLATARALQVALGSTTAASFDGTADVSPGVSGTLPLANGGTGATAAPAARTNLGSGTTGDAVFVASTPLAGRNALQAATYIGVVDGSPASAGNVGEVLTAVSASPVALTSGVAANVTSLALTPGIWEVTSIGQSIPAGGGSSGGVSAGLSTVSATLPTNWYEVYTRGYSVNGTATTSLPTRMFNITTNTTVYCVVNLTFSGGTYTARGTITARRIR
Physico‐chemical
properties
protein length:516 AA
molecular weight: 53759,22810 Da
isoelectric point:4,39623
aromaticity:0,07946
hydropathy:0,06163

Domains

Domains [InterPro]
IPR005604
3–108
IPR005604 IPR008635
G3DSA:6.10.250.2040
127–179
G3DSA:6.10.250.2040
ALA46459.1
1 516
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage BF25/12
[NCBI] 		1698708 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ALA46459.1 [NCBI]
Genbank nucleotide accession
KT240186.1 [NCBI]
CDS location
range 3150 -> 4700
strand +
CDS
ATGTACTCAGTTCAGATTGCTGTATCAGACGGCACTCTAGCTCGAATCTCTCTGAGTATCGAGTACTTTGAGAAAGATGATATTACGTTGTACCGCAATCTGGAAACAACCCCTCTGGTACTGGGAACTGATTGGCAATGGGATGGTGATACAACCATTAACCTGCTAACGAATACCCCGGTAACGGATGGGGAGTACATTACGGTTCGACGCAATACAAACATTGACCGTGCATTTAATATCTACGATGGCGGTGCGGCATTCAGCCGAGACACACTAGATGAGAACTTCCGCCAGATGATTTACCTGGCCCAGGAGTTCACAGAAGGGAACGGCCTTACGGGGCTGTTCTTCCCACTGGATATGCACGGTTTCAAGATTACTAACCTGGGTGATGGTACAGACCCTAAAGACGCTGTGAACAAAGGCCAGCTGGATGTAGTAGACCAGCGCGTGACTAATCTGGAGGAATCCTTTGTCACTAACACTGTGAGCTACCCGTGGTATGAACTAACCACAGTGGTAAAGGACACATTCTCCCCACCGTTCGTGTTTGACAAAGCTGCCGTGTTCCTTAACGGCATCTGCCAGACTCTGGGGTACAGTTACGTTGTGGTGAGTAACCAGATTCTGTTAGCCGACCCGGTACCGGTGGGTACTATGTTCTTCGCCCGTCTTGGTGAGGATGTGGGTCTGGACCCGGACTACGCCACCGCAGACCAACTAGCTGCTGCCATTGTTGACCGGGTTGCCGAGGATGCTGCCCTACAGACTCAGGTAGATAGCAAGGCAGCAAAGGGTGTGAACTCGGATATTACCCAGATTACTGGCCTTACTACTCCACTGAGCACTGCACAGGGCGGTACAGGGAACAACACGGGGACTGCACTAACTGCTACCAAGTTGGCTACCGCACGTGCCCTTCAGGTCGCACTGGGTAGTACTACGGCTGCAAGCTTCGACGGTACTGCGGATGTATCACCCGGTGTGTCGGGTACACTCCCACTGGCTAATGGCGGCACGGGGGCTACTGCTGCGCCTGCCGCCAGGACTAACCTCGGCTCCGGCACAACAGGTGATGCTGTGTTCGTTGCCTCTACTCCACTAGCAGGTCGCAACGCGTTACAAGCCGCAACCTACATTGGTGTTGTTGACGGCAGCCCCGCCAGTGCAGGGAATGTTGGCGAGGTGCTAACTGCTGTTAGTGCCTCTCCGGTAGCACTAACCTCTGGGGTAGCAGCTAACGTGACTAGTCTAGCACTTACACCCGGTATTTGGGAGGTGACATCTATTGGACAAAGCATCCCAGCTGGTGGTGGGTCGTCCGGCGGTGTATCCGCGGGATTATCAACCGTATCAGCTACACTACCCACTAACTGGTATGAGGTTTATACTCGTGGGTACTCAGTAAACGGGACAGCTACCACCAGTCTACCTACTCGGATGTTTAACATTACCACGAATACCACTGTGTACTGTGTAGTGAACTTAACGTTTTCGGGGGGCACTTATACTGCTAGGGGCACAATAACCGCACGCAGAATTCGTTAA

Tertiary structure

PDB ID
5932e66091174381140dd6abda1ed84208fb5be223acb34d6fa01404c6f33a5d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7767
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bateriophages against Dickeya spp. of Phalaenopsis orchids Dreo,T., Naglic,T., Alic,S., Peterka,M. and Ravnikar,M. 2015-10-29 — GenBank