Protein

View in Explore
Genbank accession
YP_009599186.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,85
Protein sequence
MGLYMKGSPGTVLHLTESSDARNGVGNDTIFHSSLPHVFITDEWAIPLTNFDASAVGDTYGGWNILGRYKVGSLPAGAINAIKNSSTVTLIEVFYTVNGKEYSKVINGHSITSSFDTGDAWDDWDGRMDFHDYDLHVTMRPGIGVHVGFFVGNKSTDIRQATLDQDSFGINTMRIGGDSEANSFNVARDRLWRCGYNNSFVTIDTSKFYRVGFYGGTYSGILVPPFNNLIGAPRGALANASQKFEKDMQHYSDRDRYANWWLNHRKLGTISGTTKWHGNRNASYMELWDYPTVTFTKIIIRKLNLTYNVNSGYSLTNIVPLTGEIKLDRNDFKVGGVSIKTLAAKMLHQINPSTTGSGYTYMYANPSYDGNGLPNMRSAMPLLGVASDSSINTTSGSSMVSLAPNQHNFLGIQDMKNSGNGWVITPDSIGTQTRTIWGKGGSMALKLLPGATKRVTFGGSEVTLANPESKVIATVALGLATNRASTIIMNLNTTDVRVWLPNEAYYARVGGGIMKLSSNTVPNVGGDHSILVLPINKYVQFMEVKSYKSDSGWADFSDPVVNTWLTNIAFWFRNLGNGNVEISVSHRGAPMPGKKGGNGQSLNANPKFHVPAYTMSIAALS
Physico‐chemical
properties
protein length:621 AA
molecular weight: 67724,50300 Da
isoelectric point:9,05151
aromaticity:0,10306
hydropathy:-0,24815

Domains

View on InterPro
Domain architecture
YP_009599186.1
1 621 aa
RBD 1–621
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_009599186.1
1 621 aa
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0069
Central domain 11 237 228 0,8318
C-terminal 238 621 383 0,7657
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Providencia phage vB_PreS_PR1 [NCBI] · taxon 1931407
Uroviricota Caudoviricetes Demerecviridae Priunavirus PR1
Host
Providencia sp. [NCBI] · taxon 589
cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Coding sequence (CDS)

Genbank protein accession
YP_009599186.1 [NCBI]
Genbank nucleotide accession
NC_041913 [NCBI]
CDS location
range 104746 -> 106611
strand -
CDS
ATGGGTCTTTATATGAAAGGAAGTCCGGGGACTGTCCTGCACTTAACAGAGTCCAGTGACGCACGCAATGGGGTTGGTAATGATACTATCTTTCACTCCTCATTGCCACATGTGTTTATAACTGATGAGTGGGCTATCCCATTAACTAATTTCGATGCTTCCGCTGTGGGAGATACATACGGTGGTTGGAATATTCTTGGCAGATATAAGGTAGGGTCACTACCTGCGGGTGCTATAAATGCTATTAAAAATAGTTCTACTGTTACACTTATTGAAGTATTCTACACAGTAAACGGTAAGGAATACTCTAAAGTAATTAATGGCCATAGTATAACCTCCTCGTTTGATACGGGGGATGCCTGGGATGACTGGGATGGGCGTATGGACTTCCATGACTACGATTTACATGTAACAATGCGCCCAGGGATAGGTGTACATGTAGGTTTCTTTGTGGGCAATAAATCTACTGATATTAGACAAGCCACCCTTGATCAAGATTCTTTTGGTATCAATACTATGAGAATTGGTGGTGATAGTGAGGCTAACAGTTTCAATGTTGCTAGGGATAGATTATGGAGGTGCGGGTATAATAACTCATTTGTAACCATTGACACCAGTAAGTTCTATCGTGTAGGATTTTATGGGGGGACTTACTCAGGGATTCTGGTACCTCCATTTAACAATTTAATAGGAGCCCCCCGAGGGGCTTTAGCTAACGCTTCACAGAAATTCGAAAAGGATATGCAGCATTATAGTGACCGCGATAGGTACGCTAACTGGTGGTTAAATCATCGTAAACTAGGTACTATTTCTGGTACTACTAAATGGCATGGAAACCGGAATGCCAGCTATATGGAGTTGTGGGACTACCCTACGGTAACCTTTACCAAGATTATTATCAGAAAGCTGAATCTAACTTATAATGTTAACTCAGGGTATTCTCTGACTAATATAGTCCCTTTAACAGGGGAGATTAAGCTAGATAGGAATGACTTTAAGGTGGGGGGAGTATCTATAAAAACCTTAGCAGCCAAAATGCTGCATCAAATCAATCCTAGTACTACAGGGTCTGGTTATACCTATATGTATGCTAATCCATCATATGATGGTAATGGTCTTCCCAATATGAGGTCTGCAATGCCCTTATTGGGGGTAGCTTCAGATAGTAGTATTAATACTACCTCGGGGTCCTCCATGGTAAGTCTAGCACCAAACCAACATAACTTCCTTGGTATTCAAGATATGAAAAATTCCGGAAATGGGTGGGTAATTACCCCCGACTCTATAGGAACTCAAACTCGGACGATATGGGGGAAAGGTGGGTCTATGGCGCTTAAACTACTTCCTGGGGCAACCAAAAGAGTTACTTTCGGGGGGTCTGAGGTAACATTGGCAAACCCTGAAAGTAAGGTTATTGCTACAGTAGCTCTAGGGCTAGCTACTAATAGGGCCTCTACAATTATAATGAATCTTAACACAACAGATGTCCGTGTATGGCTACCTAACGAAGCATATTATGCCAGAGTAGGGGGAGGTATTATGAAACTTTCCAGCAACACTGTTCCTAATGTGGGGGGAGATCATAGTATTCTTGTCTTGCCTATAAATAAGTATGTACAGTTTATGGAAGTAAAATCATACAAGAGCGATAGTGGTTGGGCTGACTTCTCTGATCCAGTGGTAAATACTTGGCTTACAAATATCGCATTCTGGTTCAGAAATTTAGGTAATGGTAATGTGGAGATATCAGTATCTCACAGAGGTGCCCCGATGCCTGGTAAGAAAGGCGGTAATGGTCAGTCTCTTAATGCTAATCCCAAGTTTCACGTACCAGCGTACACTATGAGCATTGCTGCTCTTTCGTAA

Genome Context

Tertiary structure

YP_009599186.1
ESMFold structure
Source ESMFold
pLDDT 24.8
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Providencia rettgeri phage vB-PreS_PR1 - a deep-branching member of the T5-like siphoviruses Oliveira,H., Pinto,G., Hendrix,H., Noben,J.-P., Gawor,J., Lobocka,M., Lavigne,R. and Azeredo,J. 2017-12 — GenBank