Phage RBP Database

Genbank accession

QSM00872.1 [GenBank]

Protein name

structural protein

RBP type

TSP

Evidence RBPdetect

Probability 0,76

TF

Evidence RBPdetect2

Probability 0,74

Protein sequence

MGGYLGQGVGDIITPDKVQGGTVTVTSDSTLSSKINADLIYVDFSSSLNITITLPKVSNKLRFSDITLEIINAPSANFNTKRLTIAMDPSDTFVGSNGETSTKVLDSKIVATGQRITLTHDSDKYWKRILLSENDPLGVSQKATAVPYGVTLSEYFLNASSGFYRIDSGTYYTNDMGFDPGIWYDILVTSHEISKYKTILAINSDGNVMNGAFIAGSWTGFKGTNIPPGVPIPYPGSTAPPGYLLVNGGSFDKTKYPQLGLLYPSGVLPDLRGQFIRGWDNGRGIDPSRSILSDQSATQLRPALWDHFGKDGSVATNAIGIGFSDPDTLTTSQPVNARSSGNVIPEAGNGDTGITGNILTSGVGGTGYWISTRPRNVAYNYIVRAQ

Physico‐chemical properties

protein length:	386 AA
molecular weight:	41224,63040 Da
isoelectric point:	5,65653
aromaticity:	0,09326
hydropathy:	-0,19145

Domain architecture

QSM00872.1

1 386 aa

ATT 224–277 · STR 278–385 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR051934
Unmapped

IPR051934

SSF88874
STR

SSF88874

IPR037053
ATT

IPR037053

IPR011083
ATT

IPR011083

QSM00872.1

1386 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1413
STR

DC_1413

QSM00872.1

1386 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR051934	Unmapped	-	179	294	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
SSF88874	STR	SSF88874	223	385	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	224	277	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	229	276	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

QSM00872.1

1 386 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	16	16	0,9471
Central domain	17	220	205	0,0211
C-terminal	221	386	165	0,8640

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Yersinia phage YerA41 [NCBI] · taxon 2815754

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Yersinia ruckeri [NCBI] · taxon 29486

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

QSM00872.1 [NCBI]

Genbank nucleotide accession

MW570730 [NCBI]

CDS location

range 106986 -> 108146
strand -

CDS

ATGGGTGGTTATTTAGGTCAAGGAGTGGGTGATATTATCACTCCTGATAAAGTTCAAGGTGGTACTGTCACTGTAACTAGTGATAGTACTCTTAGCTCAAAAATAAATGCTGATTTAATTTATGTTGATTTTTCTTCATCATTAAATATTACTATTACATTACCAAAAGTAAGTAATAAATTAAGATTTAGTGATATTACCTTAGAAATTATTAATGCTCCATCAGCTAATTTTAATACTAAAAGATTAACTATTGCTATGGATCCATCAGATACTTTTGTAGGTAGTAATGGAGAAACTTCAACAAAAGTATTAGATTCAAAAATAGTAGCTACAGGTCAAAGAATTACTTTGACTCATGATAGTGATAAGTATTGGAAAAGAATATTACTATCTGAAAATGATCCATTAGGAGTATCTCAAAAAGCTACAGCAGTACCGTACGGAGTAACTCTATCTGAATACTTTTTAAATGCATCATCTGGATTCTATAGAATTGATAGTGGAACTTACTATACTAATGATATGGGATTTGATCCAGGAATATGGTATGATATATTAGTTACTTCTCATGAAATCTCCAAGTACAAGACAATACTAGCCATCAATAGTGATGGTAATGTAATGAATGGGGCATTTATTGCTGGATCATGGACTGGATTTAAAGGTACTAATATTCCTCCAGGAGTACCTATTCCTTATCCTGGATCTACTGCTCCTCCAGGGTATTTGTTAGTCAATGGTGGATCTTTTGATAAAACTAAATACCCTCAGTTAGGATTACTATACCCTTCAGGAGTCCTTCCGGATCTTCGTGGTCAGTTTATCCGTGGGTGGGATAATGGACGAGGAATTGATCCTAGTAGGAGTATATTAAGTGATCAATCAGCTACCCAACTAAGACCTGCTTTATGGGATCATTTTGGTAAAGATGGTAGTGTTGCTACTAATGCTATTGGTATAGGATTTAGTGATCCTGACACTTTAACTACAAGTCAACCAGTTAATGCTAGATCTAGTGGTAATGTAATCCCTGAAGCTGGTAATGGTGATACTGGGATAACTGGTAACATATTAACATCAGGAGTAGGTGGTACTGGTTATTGGATATCTACTAGACCTAGAAACGTAGCTTACAATTATATTGTAAGAGCTCAATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)