Phage RBP Database

Genbank accession

QDK00361.1 [GenBank]

Protein name

putative central straight fiber

RBP type

TSP

Evidence RBPdetect

Probability 0,81

TF

Evidence RBPdetect2

Probability 0,71

Protein sequence

MVLNSIMTGYTMAYIQHSIYTDYDVIGRSFWLKLGEEVDRRDFTGIDTFFVMINNLTPSTTYQIQGAFYDSIIDSELLNAKIGINLSNETNFKTKEKPIIVAARSESEPVDVGVGAPIVVVETTGEASYCTIELKSTATEDSPWTKYYIGALGSTIKFGGVPIGDYKIRISGQVTMPDGVTVDSSGYYEFPSILTVAYNFVPPTAPIDIVFKAARIADGKERYDVRIEWDWERGAGANVREFLVTYINSEEYAKTGWAKAQKINVGAARAATIISFPWKVEHTFKVASIAWGPNKQDITESAPVTFILNEDTPLDNSFVNETGIDVNYAFIKGSMKDGEIWRQTFLIDAATGAINIGLLDEEGKAPISFDPINRVVNVDGKVITRDINAANFIMTNLSGKDNPAIYTQGKSWGDNNSGIWMGMDNTSAKAKLDIGNATQWIRYDGTTLRISSGVVIGTPNGDVDIGTGLQGKQTVFVYKLATSLPAKPLEQDYPPPGWSKTPPNRIDMTQNIYATTGTLDPVTNKLLEGTSWSDVVQWSGTEGTIGHDGQRGPGMYSMGIPGLGGWDDGQANAFFQNNFGKPPVKYDVLTQFNSNAPQTAFTRQWNGVGWINPAMVLHGNMIVNGTVTADKIVAGNAFLSQIGVNIIYDRNAALSGNPEAYYKMKIDLNSGYIHIR

Physico‐chemical properties

protein length:	676 AA
molecular weight:	73981,45830 Da
isoelectric point:	4,92836
aromaticity:	0,10503
hydropathy:	-0,20577

Domain architecture

QDK00361.1

1 676 aa

STR 1–88 · STR 94–188 · STR 202–326 · STR 341–655 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR057550
STR

IPR057550 IPR057551 IPR057552 IPR057549

IPR057551
STR

IPR057551

QDK00361.1

1676 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR057550	STR	DC_0866	1	88	InterPro cluster	Straight fiber protein PB4, first Fn3-like domain	N-terminal	Medium	Text match	229 proteins / 229 hits
IPR057551	STR	DC_0197	94	187	InterPro cluster	Straight fiber protein PB4, second Fn3-like domain	N-terminal	Medium	Text match	230 proteins / 230 hits
IPR057551	STR	DC_0197	94	188	InterPro cluster	Straight fiber protein PB4, second Fn3-like domain	N-terminal	Medium	Text match	230 proteins / 230 hits
IPR057552	STR	DC_0003	202	326	InterPro cluster	Straight fiber protein PB4, third Fn3-like domain	Central	High	Text match	998 proteins / 1603 hits
IPR057549	STR	DC_0351	341	655	InterPro cluster	Straight fiber protein PB4, spike domain	C-terminal	High	Text match	247 proteins / 290 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

QDK00361.1

1 676 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	398	398	0,8746
Central domain	399	629	232	0,2500
C-terminal	630	676	46	0,7295

Note: Constraints were applied during segmentation.
Fixed 5 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Escherichia phage vB_EcoS-26175III [NCBI] · taxon 2576480

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host No host information

Genbank protein accession

QDK00361.1 [NCBI]

Genbank nucleotide accession

MK907269 [NCBI]

CDS location

range 82524 -> 84554
strand -

CDS

ATGGTCTTAAATAGTATTATGACTGGGTATACTATGGCGTATATCCAGCATTCTATCTATACCGACTACGATGTTATCGGTAGATCATTCTGGCTTAAACTTGGCGAAGAAGTGGATAGAAGAGATTTCACTGGAATCGACACTTTCTTTGTTATGATCAATAACTTAACTCCCTCAACAACCTATCAGATTCAGGGAGCTTTTTATGACTCAATTATTGACTCAGAACTTTTAAATGCAAAAATTGGTATTAACCTCTCTAATGAAACTAACTTTAAAACAAAAGAGAAGCCAATAATTGTTGCAGCAAGATCTGAGTCAGAACCAGTGGATGTTGGGGTGGGCGCTCCAATAGTTGTTGTGGAAACTACTGGTGAAGCAAGTTACTGTACTATTGAGTTAAAAAGTACAGCCACGGAAGATAGTCCTTGGACTAAGTATTACATTGGGGCTTTAGGTTCTACTATTAAATTTGGTGGAGTTCCTATCGGAGATTATAAGATCAGAATATCTGGTCAAGTAACTATGCCTGATGGTGTTACAGTTGATTCTTCTGGTTACTATGAGTTCCCTAGTATTCTAACTGTAGCTTATAATTTTGTTCCTCCTACTGCACCTATCGATATTGTTTTTAAAGCTGCACGAATTGCTGATGGTAAAGAACGATATGATGTTAGAATTGAGTGGGATTGGGAACGCGGTGCTGGTGCTAATGTTCGTGAGTTCTTGGTTACTTATATAAACTCCGAAGAATACGCTAAGACTGGCTGGGCTAAAGCTCAAAAGATAAACGTGGGGGCTGCTAGAGCTGCAACGATTATATCATTCCCATGGAAAGTTGAACATACTTTTAAGGTAGCATCAATTGCCTGGGGGCCAAATAAACAGGATATAACAGAGTCAGCTCCTGTAACATTTATTCTGAATGAGGATACTCCTCTAGATAACAGTTTTGTCAATGAGACGGGTATTGATGTTAACTATGCCTTTATTAAGGGTAGTATGAAAGATGGGGAAATCTGGAGACAGACATTCCTAATTGATGCAGCTACTGGTGCTATTAACATTGGTCTGCTAGATGAAGAAGGAAAAGCACCTATTTCTTTCGATCCTATAAATCGTGTTGTTAACGTTGATGGTAAAGTAATTACTAGAGATATTAATGCTGCGAACTTTATTATGACTAACTTGTCTGGTAAAGATAATCCAGCAATTTACACTCAAGGTAAATCTTGGGGAGATAATAACTCTGGTATTTGGATGGGTATGGATAATACCTCCGCCAAAGCTAAATTAGATATTGGTAACGCCACACAATGGATACGTTATGACGGTACTACTCTGCGTATCTCTAGTGGTGTAGTAATTGGAACACCAAATGGTGACGTAGATATTGGAACTGGTTTACAAGGTAAGCAAACAGTATTTGTTTATAAGTTAGCAACATCTCTGCCAGCTAAACCATTAGAACAAGATTATCCACCCCCAGGCTGGTCTAAAACTCCACCTAATCGTATAGATATGACACAAAATATCTATGCGACTACAGGTACACTTGATCCAGTTACTAACAAACTTCTTGAAGGTACTAGCTGGTCTGATGTAGTTCAGTGGAGTGGTACTGAAGGTACTATAGGACACGATGGACAGCGTGGTCCTGGGATGTACTCCATGGGTATTCCTGGACTAGGTGGTTGGGATGACGGACAAGCTAATGCATTCTTCCAAAATAACTTTGGAAAACCTCCGGTTAAGTATGATGTTCTAACACAATTTAACAGTAATGCTCCGCAAACAGCATTTACCCGTCAATGGAACGGAGTTGGATGGATTAACCCTGCAATGGTTCTTCATGGCAATATGATTGTTAATGGAACTGTTACTGCGGATAAGATTGTGGCAGGAAATGCCTTCTTATCACAAATCGGTGTTAATATAATCTATGATAGAAATGCTGCGTTATCAGGGAACCCTGAAGCATACTATAAGATGAAGATAGACCTAAATAGTGGGTATATCCATATAAGGTAA

Title	Authors	Date	PMID	Source
Natural Occurrence of Escherichia coli-Infecting Bacteriophages in Clinical Samples	Pacifico,C., Hilbert,M., Sofka,D., Dinhopl,N., Pap,I.-J., Aspoeck,C., Carrico,J.A. and Hilbert,F.	2019	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature