Phage RBP Database

Genbank accession

UPW39487.1 [GenBank]

Protein name

short tail fibers protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect2

Probability 0,83

Protein sequence

MSYHKHAGGFGEWDDSGAFGNTRRSNFVGTRKGLDWDNRSYFTNDGYEIDAASQRNSRYTLNRKELIGNETRPWNISLNYLIKVK

Physico‐chemical properties

protein length:	85 AA
molecular weight:	9865,69040 Da
isoelectric point:	9,39390
aromaticity:	0,14118
hydropathy:	-1,05529

Domain architecture

UPW39487.1

1 85 aa

STR 1–84 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR044916
STR

IPR044916

IPR027448
RBD

IPR027448

SSF88874
STR

SSF88874

UPW39487.1

185 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR044916	STR	IPR044916	1	77	Merged direct domain	Short tail fibre protein, C-terminal superfamily	Central	Low	Positional only	2 proteins / 2 hits
IPR027448	RBD	DC_0877	1	84	InterPro cluster	Short tail fibre protein, C-terminal	C-terminal	High	Text match	424 proteins / 427 hits
SSF88874	STR	SSF88874	1	84	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits

Proteins with similar domain architecture

Phage

Escherichia phage vB_EcoM_ESCO47 [NCBI] · taxon 2918870

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host No host information

Genbank protein accession

UPW39487.1 [NCBI]

Genbank nucleotide accession

OM386662.1 [NCBI]

CDS location

range 162116 -> 162373
strand -

CDS

ATGTCGTATCATAAGCACGCAGGTGGTTTTGGCGAATGGGACGATTCTGGCGCATTTGGTAACACTCGACGTTCAAACTTTGTCGGCACTAGGAAAGGTCTTGACTGGGACAACCGTTCGTATTTCACTAACGATGGTTATGAAATCGACGCAGCGAGCCAACGTAATTCTAGATACACTCTAAATCGTAAAGAGCTTATTGGAAATGAAACCCGCCCATGGAATATTTCTTTAAACTATCTTATTAAGGTAAAATAA

Title	Authors	Date	PMID	Source
Avian Pathogenic Escherichia coli bacteriophages	Nicolas,M., Trotereau,A. and Schouler,C.	2015-06	—	GenBank

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature