Phage RBP Database

Genbank accession

YAF80494.1 [GenBank]

Protein name

central tail fiber J

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,86

TF

Evidence RBPdetect2

Probability 0,97

Protein sequence

MYNGRTFKWHKRLKAMIKNMITGSKGGSSKPHTPVEMEDNLISINRIRILLAVSDGEVDPDFSLKDLYFDDVPVMNQDGSLNFQNVKAEFRPGTQTQDYIQGFTDTASEITVARDLTAATPYIISVTNKNLSAIRIKILMPRGVTQEDNGDLTGVRVEYAVDMAVDGAEYKEVLHDVIEGKTMSGYDRSRRIDLPVFNDRVLLRVRRLTDSTSARVTDLIKMQSYAEVVDAKFRYPLTGLVYVEFDSELFPNALPNISIKKKWKIINVPSNYDPISRTYSGSWDGTWKKAWSNNPAFVLYDLITNQRYGLDQRELGIALDKWSIYECAQYCDQMVPDGKGGTEPRYLCDVVIQSQVEAYQLVRDICSIFRGMSFWNGESLSIVIDKPRDASYIFTNDNVVNGEFTYTFASEKSMYTQCNVTFDDEQNMYQQDVEGVFETEAALRFGYNSTSITAIGCTRRSEANRRGRWILKTNVKSTTVNFATGLEGMIPTVGDVIVVSDNFWSSALTLNLSGRVMEVSGLQVFTPFKVDARAGDRILVNKPDGKPVGRTIARVSDDGKTLTLNTTFGFDVQPDTIFAIERTDIAQQRYVVTGITKGDGDEEFTYNITAVEYDPNKYDEIDYGVNIDDRPTSIVQPDILPAPQNVKIESYSRVVQGASVETMHVSWDKVEYASLYEMQWRKDNGNWNNTPRTANKETEVEGIYAGNYHVRVRSVAANGSSSGWSAIVSAGLTGKVGEPEKPINLTASDNEVFGIRVKWGMPEGSGDTAYIELHQAPNGSDGHPIVDEATLLTLIPFPQYEYWHSILPAGHVVWYKARAVDKIGNVSDWTDFVRGMASTDTSIITDHIKVDIENSEGYKWLEENAIKSNDKIHSAAESIIQNALANDTDVRVMRKENGKRKAEFRQSIQMIADETEARVTALTQLKAEFDEEITSEVTRLDQAIATESETRATAIEELKSQIGDDIQGQLTRVEEAIASETEARVSADTALTAKFGDLESALTEKLDSWAGVDSVGAQYSMKLGLTYNGQQYSAGMVMQLTQSPQGLISQILFDANRFAIMTSSIGGVYTLPFVVENNQVFINSLLVKDGSITNAMIGNFIQSNNFVQNQQGWRLDKNGIFENYGSTPGEGATKFTNEGLKVKDANGVLRVEVGRITGSW

Physico‐chemical properties

protein length:	1160 AA
molecular weight:	129289,38520 Da
isoelectric point:	4,89937
aromaticity:	0,09052
hydropathy:	-0,36922

Domain architecture

YAF80494.1

1 1160 aa

ATT 107–231 · ATT 354–509 · STR 640–730 · RBD 1002–1133 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053171
Unmapped

IPR053171 Coil IPR015406

IPR055385
ATT

IPR055385 IPR032876 IPR036116

IPR003961
STR

IPR003961

IPR013783
STR

IPR013783

YAF80494.1

11160 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0014
STR

DC_0014

YAF80494.1

11160 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	18	895	InterPro	Viral Tip Attachment Protein	-	-	-	-
IPR055385	ATT	DC_0360	107	231	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	354	509	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR036116	STR	IPR036116	640	729	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR003961	STR	DC_0003	641	730	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR013783	STR	IPR013783	641	730	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
Coil	Unmapped	-	912	932	Coils	Coil	-	-	-	-
IPR015406	RBD	DC_0135	1002	1133	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YAF80494.1

1 1160 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	516	516	0,8773
Central domain	517	1103	588	0,0656
C-terminal	1104	1160	56	0,7964

Note: Constraints were applied during segmentation.
Fixed 35 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Salmonella phage CBDS-05 [NCBI] · taxon 3459909

Viruses

Host

Salmonella enterica [NCBI] · taxon 28901

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

YAF80494.1 [NCBI]

Genbank nucleotide accession

PX104385.1 [NCBI]

CDS location

range 15556 -> 19038
strand +

CDS

ATGTACAATGGCAGAACGTTTAAATGGCACAAAAGGTTAAAAGCTATGATCAAAAATATGATAACTGGCAGTAAGGGCGGTTCTTCAAAGCCTCATACACCTGTTGAAATGGAAGATAACCTAATTTCAATTAACAGGATCAGAATTCTTTTAGCCGTTTCTGATGGTGAAGTTGATCCAGACTTTTCATTGAAAGATTTATATTTTGATGACGTTCCGGTTATGAATCAGGATGGTTCACTAAACTTTCAGAATGTTAAAGCAGAATTCAGACCAGGAACGCAAACGCAGGATTATATTCAGGGGTTTACTGATACAGCCAGCGAAATTACAGTTGCTCGCGATCTGACAGCCGCAACGCCTTATATTATTTCCGTCACCAATAAAAACCTTTCTGCGATCCGCATTAAAATTTTAATGCCTCGCGGGGTTACTCAGGAAGATAACGGAGATCTAACAGGTGTCCGAGTTGAATATGCTGTTGATATGGCTGTTGATGGTGCTGAATATAAAGAGGTTTTGCATGATGTAATTGAAGGTAAAACAATGAGCGGTTACGACAGAAGCCGCCGAATTGATTTACCTGTTTTCAATGATCGTGTTTTATTGCGCGTCCGTCGCCTGACAGATAGCACGTCAGCAAGGGTAACGGATCTGATTAAAATGCAAAGCTATGCGGAAGTTGTAGATGCTAAATTTCGTTACCCCTTGACTGGTTTAGTATATGTTGAGTTTGACAGCGAATTATTCCCTAATGCGTTGCCGAATATCAGCATTAAGAAAAAATGGAAAATCATTAATGTTCCGTCAAATTATGATCCTATTTCCCGCACTTACTCAGGGTCATGGGATGGAACCTGGAAAAAGGCATGGAGTAATAACCCTGCTTTTGTTCTGTATGATTTGATTACCAATCAGCGTTACGGACTCGATCAAAGAGAATTAGGCATCGCGCTTGATAAATGGAGCATTTACGAATGTGCGCAGTATTGCGATCAGATGGTTCCAGACGGTAAAGGCGGAACAGAGCCGCGCTATCTTTGCGACGTTGTGATCCAGAGCCAGGTAGAAGCGTATCAGCTTGTCCGTGATATTTGCTCAATCTTTCGAGGAATGAGTTTTTGGAACGGTGAAAGCCTTTCAATTGTGATCGATAAGCCGCGCGATGCGTCATACATCTTTACCAATGACAACGTGGTTAATGGTGAGTTTACTTACACGTTTGCCAGCGAGAAAAGCATGTACACGCAATGTAACGTGACTTTCGACGACGAACAAAACATGTATCAACAGGATGTTGAGGGAGTTTTCGAAACGGAGGCGGCGTTACGCTTTGGATATAACAGCACGTCAATAACTGCTATCGGTTGCACTCGACGTAGTGAGGCTAATCGCCGTGGGCGCTGGATTCTGAAAACCAACGTCAAGAGCACAACGGTAAACTTTGCTACAGGTCTGGAAGGTATGATCCCAACCGTAGGCGATGTGATTGTTGTATCTGATAATTTTTGGTCAAGCGCTCTAACGCTGAATCTATCAGGTCGCGTGATGGAGGTTAGCGGGTTGCAGGTGTTCACGCCGTTTAAGGTTGACGCAAGAGCAGGTGATCGCATTCTGGTAAATAAGCCGGATGGTAAGCCAGTTGGTCGAACCATTGCGCGTGTAAGTGATGACGGTAAAACGCTAACGCTAAACACGACATTTGGCTTTGACGTTCAGCCAGATACCATTTTTGCAATTGAGCGAACCGATATTGCACAGCAACGATATGTTGTAACCGGAATCACTAAGGGTGACGGTGATGAAGAATTTACCTACAACATAACGGCTGTTGAATACGATCCTAACAAATACGATGAAATTGATTATGGCGTAAACATTGATGACCGTCCGACTTCAATCGTGCAGCCTGACATTTTGCCAGCGCCGCAAAACGTCAAGATCGAATCTTATTCGCGAGTTGTCCAGGGCGCGAGCGTGGAAACAATGCACGTTTCATGGGATAAGGTTGAATATGCAAGCCTTTATGAAATGCAGTGGAGAAAAGACAATGGCAACTGGAACAACACGCCGCGCACAGCCAACAAGGAAACGGAAGTTGAAGGAATTTATGCCGGAAACTATCACGTAAGGGTTAGATCTGTTGCAGCGAATGGTTCATCGTCTGGATGGTCAGCCATTGTAAGCGCCGGATTAACCGGAAAAGTTGGAGAGCCGGAAAAGCCAATTAACCTTACAGCGTCTGACAATGAAGTTTTTGGCATTCGTGTTAAATGGGGTATGCCGGAAGGAAGCGGAGACACGGCATATATTGAGTTACATCAAGCGCCAAACGGTTCTGATGGTCATCCTATTGTTGATGAAGCAACGCTCTTAACGCTGATACCGTTCCCGCAATATGAGTATTGGCATTCAATATTGCCAGCGGGTCATGTTGTCTGGTACAAGGCAAGGGCTGTTGACAAAATCGGGAATGTTTCTGATTGGACTGATTTTGTGCGCGGCATGGCATCAACTGACACAAGCATTATTACAGATCACATTAAGGTTGATATTGAAAATTCGGAGGGCTACAAATGGCTTGAAGAGAACGCGATTAAATCAAACGATAAGATCCACAGTGCAGCAGAATCAATCATTCAAAACGCGTTAGCGAATGATACTGATGTTAGAGTTATGAGAAAGGAGAATGGGAAACGGAAAGCTGAATTTAGGCAATCTATACAGATGATTGCTGATGAAACAGAGGCAAGGGTAACAGCGTTAACGCAATTAAAAGCAGAATTTGATGAGGAGATAACTAGCGAAGTAACAAGACTTGATCAGGCGATCGCAACAGAATCAGAAACGCGAGCAACAGCTATAGAGGAATTAAAATCACAGATTGGTGATGATATTCAGGGGCAGTTAACGAGAGTTGAGGAAGCTATTGCAAGCGAAACAGAAGCGCGCGTTTCTGCCGATACTGCATTAACGGCAAAGTTTGGTGATCTTGAGTCAGCACTTACTGAAAAACTTGATTCATGGGCTGGCGTTGATTCCGTTGGTGCTCAATATTCAATGAAGCTGGGCCTAACCTATAACGGTCAGCAGTACAGCGCCGGAATGGTTATGCAGTTAACGCAATCACCGCAAGGATTAATATCACAGATTCTGTTTGACGCTAATAGATTCGCGATCATGACAAGTTCTATCGGCGGGGTATATACGCTTCCTTTCGTGGTTGAGAATAACCAGGTTTTCATCAATAGCTTACTTGTGAAAGATGGTTCAATAACTAATGCTATGATTGGAAACTTTATTCAGTCAAACAATTTTGTTCAAAATCAGCAAGGTTGGAGGCTTGATAAAAACGGAATATTTGAAAACTACGGATCAACTCCAGGAGAGGGAGCTACTAAATTCACCAACGAAGGATTGAAGGTAAAAGATGCAAACGGAGTATTGAGGGTTGAAGTCGGAAGGATTACCGGAAGCTGGTAA

Title	Authors	Date	PMID	Source
A machine learning approach to predict strain-specific phage-host interactions	Camejo,P.Y., Leon,L.E., Rojas,F., Ossa,A., Hurtado,R., Tichy,D., Pieringer,C., Pino,M., Mora-Uribe,P., Ulloa,S., Norambuena,R., Tobar-Calfucoy,E., Aguilera,M., Rojas-Martinez,V., Cifuentes,O., Sabag,A., Cifuentes,N., San Martin,D., Infante,C., Cifuentes,P. and Pieringer,H.	—	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature