Phage RBP Database

Genbank accession

YAS69372.1 [GenBank]

Protein name

structural protein

RBP type

TSP

Evidence RBPdetect

Probability 0,74

Protein sequence

MPTINVLVAPYVVRNKPETERGHVVTGVAKGWQKTSLNQDPDEILTECKGLDELLTKSNLEADGVTKIDPSKPVGFLVSYEIHDPSAVLTTGLTITPATANGEIGQVVELLATVFPANATYKGVNWYSGDVTKAVHIGGGKFKLLQSGSVTVYGVTVEGNHVDSTVITVAGALSLSTDLTATKDVTGGEDATFSVVAAGGTTPYTYVWHFSDVPGGAGSVIDAGTNATASTANLVVTAVDAADEGEYWCVVSDADGHSVTSTRCEMAVV

Physico‐chemical properties

protein length:	269 AA
molecular weight:	27862,79760 Da
isoelectric point:	4,55982
aromaticity:	0,06320
hydropathy:	0,08662

Domain architecture

YAS69372.1

1 269 aa

STR 86–269

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.60.40.1080
STR

G3DSA:2.60.40.1080 IPR013783

IPR008964
RBD

IPR008964 IPR003599

IPR007110
STR

IPR007110

PF13927
STR

PF13927

IPR036179
RBD

IPR036179

cd00096
STR

cd00096

YAS69372.1

1269 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0400
STR

DC_0400

YAS69372.1

1269 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	86	170	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR008964	RBD	IPR008964	88	166	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR007110	STR	DC_0008	164	260	InterPro cluster	Immunoglobulin-like domain	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR013783	STR	IPR013783	176	267	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR003599	STR	DC_0008	180	269	InterPro cluster	Immunoglobulin domain subtype	C-terminal	Medium	Text match	304 proteins / 473 hits
PF13927	STR	DC_0008	183	252	InterPro cluster	Immunoglobulin domain	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR036179	RBD	IPR036179	184	262	Merged direct domain	Immunoglobulin-like domain superfamily	C-terminal	Low	Positional only	1 proteins / 1 hits
cd00096	STR	DC_0826	191	262	InterPro cluster	Ig	C-terminal	Low	Positional only	1 proteins / 1 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YAS69372.1

1 269 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	208	208	0,6754
Central domain	209	258	51	0,3631
C-terminal	259	269	10	0,9804

Note: Constraints were applied during segmentation.
Fixed 58 C-terminal predictions appearing before Central domain|C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Klebsiella phage JAB13 [NCBI] · taxon 3455813

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host No host information

Genbank protein accession

YAS69372.1 [NCBI]

Genbank nucleotide accession

PV987926 [NCBI]

CDS location

range 63764 -> 64573
strand -

CDS

ATGCCAACAATCAATGTATTAGTCGCGCCGTATGTTGTACGCAACAAACCGGAGACCGAACGTGGTCATGTTGTTACCGGGGTTGCCAAGGGCTGGCAGAAAACCAGTCTGAACCAAGACCCGGACGAAATTCTGACCGAATGTAAAGGTCTTGATGAACTTCTGACCAAGTCTAATCTGGAAGCAGACGGCGTGACCAAAATCGATCCTTCGAAGCCCGTTGGCTTCCTGGTATCTTACGAAATTCATGATCCCAGCGCAGTCCTGACTACTGGCCTGACTATCACCCCGGCGACCGCCAATGGTGAAATTGGGCAGGTGGTTGAACTTCTGGCGACGGTGTTCCCGGCGAATGCGACCTATAAAGGCGTCAACTGGTATTCCGGTGACGTGACTAAAGCGGTCCATATCGGCGGCGGTAAATTCAAACTGCTTCAGTCCGGTTCCGTTACCGTCTATGGCGTCACCGTAGAAGGCAACCATGTCGATTCAACCGTCATCACCGTTGCGGGCGCTTTGTCTCTTTCAACCGATCTGACGGCAACTAAAGACGTGACAGGTGGTGAAGACGCGACATTTAGCGTTGTCGCTGCGGGCGGCACTACCCCGTACACTTATGTGTGGCATTTCTCTGATGTGCCGGGTGGCGCAGGTTCGGTTATTGACGCTGGCACCAACGCGACTGCATCAACCGCTAACCTGGTTGTGACTGCTGTGGATGCTGCCGACGAAGGCGAATATTGGTGTGTTGTTTCTGACGCCGATGGCCATTCAGTGACTTCTACCCGTTGTGAAATGGCTGTAGTCTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)