Phage RBP Database

Genbank accession

AMR57638.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,51

Protein sequence

MSIVIRRKNGDVLWFDAITEYGLTYQSSVTKHPVATGGYVSDHTTNENLIININAVLTDADFNINRPQNLGKLSTFDSGSVSVDDRGLYKPVNKQYTTNSGSITPVKIESIGSINRLLPEVIAQFTKDSIPVATVTPQSRAKTARAVKRELISMRNNREEFQVLELLDDFVIESYGPCIFTNLSFKEDSTTGEGVYPSMTIEEVTFTNLEEISVKVKTSNKGRKSGAAKDKLLETPPDNAPRTYTKMSSSAAAS

Physico‐chemical properties

protein length:	254 AA
molecular weight:	27940,11740 Da
isoelectric point:	6,19542
aromaticity:	0,07087
hydropathy:	-0,37283

Domain architecture

AMR57638.1

1 254 aa

ATT 15–214 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR048494
ATT

IPR048494

AMR57638.1

1254 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1100
STR

DC_1100

AMR57638.1

1254 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR048494	ATT	DC_0432	15	214	InterPro cluster	Dit-like phage tail protein, N-terminal domain	Central	Medium	Text match	416 proteins / 416 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

AMR57638.1

1 254 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	62	62	0,7072
Central domain	63	243	182	0,3579
C-terminal	244	254	10	0,9927

Note: Constraints were applied during segmentation.
Fixed 15 C-terminal predictions appearing before Central domain|C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Pseudomonas phage vB_PsyM_KIL3 [NCBI] · taxon 1777067

Uroviricota Caudoviricetes Vandenendeviridae Flaumdravirus Flaumdravirus KIL4

Host

Pseudomonas syringae pv. porri [NCBI] · taxon 83964

Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas coronafaciens

Genbank protein accession

AMR57638.1 [NCBI]

Genbank nucleotide accession

KU130128.1 [NCBI]

CDS location

range 37680 -> 38444
strand +

CDS

ATGTCCATTGTAATTAGAAGAAAAAACGGGGACGTGTTGTGGTTTGACGCAATCACTGAGTATGGCTTGACCTACCAGTCAAGCGTAACCAAACACCCTGTCGCCACAGGTGGTTACGTATCAGACCACACCACAAATGAAAACCTCATCATAAACATCAATGCTGTGCTCACTGACGCCGACTTCAATATAAATCGACCTCAGAATCTAGGGAAACTCTCCACATTTGATTCGGGTAGCGTTAGTGTTGATGATAGAGGCTTATATAAACCTGTTAATAAGCAATACACCACAAACAGTGGCAGTATCACTCCTGTAAAAATTGAATCTATAGGCAGCATAAACAGATTGCTGCCTGAGGTTATCGCACAGTTTACAAAGGACAGTATACCCGTAGCCACTGTCACTCCCCAGAGTAGGGCTAAAACAGCTAGAGCTGTTAAGCGTGAGTTGATCAGTATGAGAAACAACAGAGAGGAGTTTCAAGTATTAGAACTCCTTGATGATTTTGTTATTGAGAGCTACGGCCCTTGCATATTTACAAACTTATCCTTTAAAGAGGACTCTACAACTGGGGAAGGTGTTTACCCAAGTATGACTATAGAGGAAGTTACTTTCACTAATTTGGAAGAAATCAGTGTGAAAGTAAAGACTTCTAATAAAGGTAGAAAGTCTGGTGCTGCGAAAGATAAGCTGTTAGAAACACCACCTGACAACGCACCAAGAACTTACACTAAAATGTCTAGCAGCGCTGCTGCCTCATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)