Phage RBP Database

Genbank accession

YP_009792028.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TF

Evidence RBPdetect

Probability 0,91

TF

Evidence RBPdetect2

Probability 0,91

Protein sequence

MAYTEIAMAVGNSPEILARNVKMMISSGFQPYGDVQMLSGTLFGMKMAKGTANNVEDFMVTSDTTIQGLVNRVNRYLAQGWRRFGNAHFEDGAYLSALAKGDFVSDEEGGSGEAGPQGPVGPQGPAGPAGAIGPQGPQGPTGATGPAGAAGAKGETGPAGPVGPQGPQGETGEAGPQGPIGATGAAGPAGPKGDKGDAGPVGPAGLTFRGMYDAATAYVKDDVVTFNNSSWFATAAVTGENPDVSDSWELLAAQGAPGPQGSAGPAGPTGPTGPAGIQGPQGERGLQGEQGPAGPQGLQGVAGAVGPQGPAGPQGERGLQGPTGPQGLQGVAGPASYNVASGVRSGLINQTDTDFIDIPGETTIRFALTGEKNATVAAKGLWVGVSNTGTSNIASIRHTAYQIDSLTTVAADKLKNYTAIVTSMPPGTALWNSVFKPGVFGVTSEHYVTTSPGATADSKCFKLTIVGIRNSSDALAGVYAYKVENLSEPLA

Physico‐chemical properties

protein length:	491 AA
molecular weight:	48910,64060 Da
isoelectric point:	4,80343
aromaticity:	0,06314
hydropathy:	-0,23585

Domain architecture

YP_009792028.1

1 491 aa

STR 148–251 · STR 255–362 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR050149
Unmapped

IPR050149

IPR008160
STR

IPR008160 IPR036573 IPR008160

G3DSA:1.20.5.320
STR

G3DSA:1.20.5.320 G3DSA:1.20.5.320

IPR003610
CBM

IPR003610

YP_009792028.1

1491 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1122
ATT

DC_1122 DC_0876 DC_1687

YP_009792028.1

1491 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR050149	Unmapped	-	109	334	InterPro	Collagen superfamily	-	-	-	-
IPR008160	STR	DC_0536	148	205	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	181	228	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
IPR036573	STR	IPR036573	208	251	Merged direct domain	Carbohydrate-binding module superfamily 5/12	Central	Low	Positional only	2 proteins / 2 hits
IPR003610	CBM	DC_0028	212	251	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
IPR008160	STR	DC_0536	255	309	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	303	362	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits

Proteins with similar domain architecture

Phage

Shigella phage Sf12 [NCBI] · taxon 2024315

Uroviricota Caudoviricetes Drexlerviridae Eastlansingvirus Eastlansingvirus Sf12

Host

Escherichia coli B [NCBI] · taxon 37762

Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia

Genbank protein accession

YP_009792028.1 [NCBI]

Genbank nucleotide accession

NC_047848.1 [NCBI]

CDS location

range 34681 -> 36156
strand -

CDS

ATGGCTTACACAGAAATTGCTATGGCAGTAGGGAATTCACCTGAAATCTTAGCCAGAAACGTAAAAATGATGATTTCATCAGGATTCCAGCCATATGGCGACGTGCAGATGCTGAGCGGCACCCTCTTTGGCATGAAGATGGCGAAGGGAACAGCAAACAACGTTGAAGACTTCATGGTGACATCCGATACCACAATTCAGGGATTAGTTAACAGGGTTAACAGATATCTAGCCCAGGGCTGGCGCAGGTTTGGCAATGCCCACTTCGAAGATGGTGCTTATCTTTCAGCGCTGGCGAAAGGTGATTTTGTAAGTGATGAAGAAGGAGGCTCAGGTGAAGCAGGCCCACAAGGTCCGGTTGGTCCACAGGGTCCAGCGGGCCCGGCAGGAGCTATTGGTCCACAGGGTCCTCAAGGCCCAACAGGTGCTACCGGCCCGGCAGGCGCGGCAGGTGCTAAAGGCGAAACTGGTCCAGCTGGCCCCGTAGGCCCGCAAGGTCCTCAAGGTGAAACTGGCGAGGCTGGTCCGCAAGGCCCTATCGGTGCAACTGGCGCAGCAGGTCCTGCTGGCCCTAAAGGTGATAAAGGTGATGCGGGCCCAGTTGGTCCGGCAGGCTTAACATTCCGCGGGATGTACGACGCAGCGACAGCTTACGTTAAAGATGACGTTGTTACATTCAATAACTCAAGCTGGTTTGCTACCGCCGCCGTGACCGGAGAAAATCCAGATGTTAGCGATTCCTGGGAGTTACTGGCCGCACAGGGTGCTCCAGGCCCACAGGGTTCCGCTGGTCCAGCAGGCCCAACTGGCCCGACAGGTCCGGCAGGTATTCAAGGCCCACAAGGCGAGAGGGGCCTGCAAGGTGAGCAAGGCCCAGCTGGCCCGCAAGGCTTACAAGGTGTAGCTGGTGCAGTTGGACCACAAGGCCCGGCAGGCCCGCAGGGTGAGCGTGGATTGCAGGGCCCTACGGGACCTCAGGGCTTACAGGGGGTGGCTGGTCCAGCCTCTTATAACGTAGCTTCAGGCGTAAGGTCAGGGTTGATCAATCAGACGGATACTGACTTTATAGATATACCTGGAGAGACAACAATAAGGTTCGCTCTTACCGGAGAGAAGAATGCGACAGTTGCCGCTAAGGGGCTGTGGGTTGGTGTTAGTAATACCGGTACATCAAACATCGCTTCAATAAGGCACACTGCATACCAGATTGACTCACTCACTACAGTTGCAGCTGATAAGTTGAAAAACTACACAGCGATAGTAACAAGCATGCCTCCTGGGACTGCTCTTTGGAATAGCGTGTTCAAGCCAGGAGTTTTTGGAGTCACATCTGAGCACTACGTAACCACATCACCAGGAGCTACAGCTGACTCTAAATGCTTCAAGCTTACAATAGTTGGCATAAGGAACTCATCCGATGCCTTGGCTGGCGTTTACGCTTATAAGGTGGAAAACTTAAGCGAACCTCTCGCATAG

Title	Authors	Date	PMID	Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment	Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N.	2020-09-29	—	GenBank

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature