Protein

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Genbank accession
YP_214593.1 [GenBank]
Protein name
sericin 1 precursor-like protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,77
Protein sequence
MSQLNVDKVVSLSGGGGTAEFQLVSNGNFNFDSGTFYIDSANNRVGIGTTSPRVSLDIANTDGMIVPVGTTVQRPGSAVEGMFRYNSTDRTFEGYAHNSTTNVTEWGPIAGAGGIPTQSTSRYSDDYSVNASLKSDGTNAFWSLDGTDTDWSMARIWTHGYVGGGYRSGSPWSNVNRTVHATDTSTNLGDTLDRSGAYMSGSWNDRRHFYHSMENTYRGSSTYTSGFSMTNEAGIAHQSAWDMTVNRASMGSFQDHVFAGGYSYLHGGGNARTDVFNLTTEVMRTSGFPPDQNDGGDDPTWGGHGRLMGWWKRSGSRAGFRWANESWTSWNHGPGGDGWKKILPTMIGHMYVGTGNNAQNGNQKVDDTTGIQVRGLDFGNMGEENFEMGMRKGYCLGNYNGAQNNNTFKVNYGTDSYNNLGGSSPPTGHDGMSSAHCCSSSSISGTTTGGSVVYDYGTTIPNY
Physico‐chemical
properties
protein length:463 AA
molecular weight: 49796,28470 Da
isoelectric point:5,56848
aromaticity:0,11231
hydropathy:-0,65724

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_214593.1
1 463 aa
Domain Start End Length (AA) Confidence
N-terminal 1 107 107 0,0630
Central domain 108 308 202 0,3813
C-terminal 309 463 154 0,6965
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Prochlorococcus phage P-SSM4 [NCBI] · taxon 268747
Uroviricota Caudoviricetes Pantevenvirales Ronodorvirus Ronodorvirus ssm4
Host
Prochlorococcus [NCBI] · taxon 1218
Bacteria Cyanobacteria Prochlorales Prochlorococcaceae
Host
Prochlorococcus marinus str. NATL2A [NCBI] · taxon 59920
Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus

Coding sequence (CDS)

Genbank protein accession
YP_214593.1 [NCBI]
Genbank nucleotide accession
NC_006884 [NCBI]
CDS location
range 31500 -> 32891
strand +
CDS
ATGTCTCAATTAAATGTTGATAAAGTTGTTTCTCTGAGTGGCGGTGGTGGTACTGCTGAGTTTCAGTTGGTTTCTAATGGAAATTTTAATTTTGACTCAGGAACTTTTTACATAGATTCTGCTAATAATCGAGTTGGTATTGGAACTACCTCACCGAGGGTAAGTCTCGATATTGCAAATACAGATGGTATGATAGTTCCTGTAGGAACTACAGTACAGAGACCAGGATCGGCAGTAGAAGGTATGTTCCGCTACAATAGTACCGATCGAACCTTTGAAGGATACGCACATAACTCTACTACAAATGTCACAGAGTGGGGACCTATTGCAGGTGCAGGTGGAATACCGACACAGAGTACAAGTAGATATAGTGATGACTATTCAGTTAATGCTTCACTTAAATCTGATGGTACAAACGCATTTTGGTCTTTAGATGGTACAGATACCGATTGGTCAATGGCAAGAATTTGGACACATGGATATGTAGGAGGAGGATATAGATCAGGGTCACCTTGGAGTAATGTTAATAGAACAGTTCATGCTACTGATACATCAACAAACTTAGGAGATACACTAGACAGATCAGGTGCATATATGTCTGGATCATGGAATGATAGGAGACACTTCTATCACTCAATGGAGAACACATACAGAGGATCATCAACATATACCTCTGGTTTTAGTATGACAAATGAAGCAGGTATAGCTCATCAATCTGCATGGGATATGACAGTAAATAGAGCATCTATGGGTTCATTCCAAGATCATGTATTTGCAGGAGGATATTCTTACTTACATGGTGGTGGTAATGCAAGAACTGACGTATTTAATCTTACAACAGAGGTCATGAGAACTTCTGGATTCCCACCTGATCAGAATGATGGTGGTGATGACCCAACATGGGGAGGACATGGTAGACTCATGGGATGGTGGAAGAGATCAGGTTCAAGAGCAGGATTTAGATGGGCAAACGAATCATGGACATCATGGAACCACGGACCAGGTGGTGATGGATGGAAGAAAATACTTCCTACTATGATCGGTCACATGTACGTTGGAACTGGTAATAACGCACAAAATGGTAATCAAAAGGTTGATGATACTACAGGCATACAGGTTAGAGGTCTTGACTTTGGTAATATGGGTGAAGAAAACTTTGAAATGGGTATGAGAAAGGGATACTGTTTAGGAAACTACAATGGTGCTCAGAACAATAATACCTTCAAGGTGAACTATGGAACCGATTCATATAATAATCTTGGTGGATCATCACCCCCAACTGGTCACGATGGTATGAGTTCTGCTCACTGTTGTTCATCCAGTTCAATATCTGGTACAACTACTGGTGGTTCAGTAGTGTATGACTACGGTACAACTATTCCTAATTACTAA

Genome Context

Tertiary structure

YP_214593.1
ESMFold structure
Source ESMFold
pLDDT 36.5
Oligomeric state monomer
Download structure