Phage RBP Database

Genbank accession

YP_009619559.1 [GenBank]

Protein name

virion structural protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect2

Probability 0,59

Protein sequence

MRIELTDYNSDPSTTIKIYRHYYPFDVDNLPPVLVELPGDASSYTDETLILNTMVYYRISVVHNGNEVVGPLYTTMKRYYTGPQINKDRPDQILRGDNYIGRYGTLPLDTVLSLNVAKQLVPSCTVIDGIVPETIEVEKCSYHGNVLFISTVPVFHGSPEDLYNDGALLSHGDGSGILSSALYDSIATKVNQGKPITYNNYSFKFRLMTTSEYAELYVKLYPESQMGLACERVISNCNTHPFKSPVVNIGSQGETFKTVGLDGSSIDTNWTTKGPLYMVVELMNRGDMGWPNPEVSVTLADPTDRMMFCQSEIVNGRAHFFGGIYSKFNSYSSAINKHISVNLDGTDRQVHADMPVGVYNACTWVHGNKIYCLGGAKKIGSGEYTYSELYNDIQVWEDNGTQEGIWTTITNSLPFYYGASVTTYQDMKSDKKRLLYIGGYNDVVPSGKNNFATADLDTFDGTFTVYDRATFYSGGGGGPVTQYEDYFLWVGPETRTNNYTNATFSFTIPENVDDFIYTSGIKQQGTELPTTKGGKIHVWRDTIFMFSEASIDQKQGELYLYQFVPSESRWLKITVPIPGLSEDTRASISGAFHEGKLVLMLNQPWTNASYVSSFYSISLIDPIDAPIVPVTDVVVGNSRIFTTYAEVSI

Physico‐chemical properties

protein length:	649 AA
molecular weight:	72343,31930 Da
isoelectric point:	4,90170
aromaticity:	0,12173
hydropathy:	-0,25362

Domain architecture

YP_009619559.1

1 649 aa

STR 270–574 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR015915
STR

IPR015915

IPR015915
STR

IPR015915

IPR015915
STR

IPR015915

YP_009619559.1

1649 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1242
ATT

DC_1242 DC_2226

YP_009619559.1

1649 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR015915	STR	IPR015915	270	574	Merged direct domain	Kelch-type beta-propeller	Central	Low	Positional only	52 proteins / 52 hits
IPR015915	STR	IPR015915	280	574	Merged direct domain	Kelch-type beta-propeller	Central	Low	Positional only	52 proteins / 52 hits
IPR015915	STR	IPR015915	291	508	Merged direct domain	Kelch-type beta-propeller	Central	Low	Positional only	52 proteins / 52 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_009619559.1

1 649 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	417	417	0,2833
Central domain	418	638	222	0,4319
C-terminal	639	649	10	0,7203

Note: Constraints were applied during segmentation.
Fixed 6 C-terminal predictions appearing before Central domain|C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Pseudomonas phage SL2 [NCBI] · taxon 2041345

Uroviricota Caudoviricetes Chimalliviridae Phikzvirus SL2

Host

Pseudomonas aeruginosa [NCBI] · taxon 287

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales

Genbank protein accession

YP_009619559.1 [NCBI]

Genbank nucleotide accession

NC_042081 [NCBI]

CDS location

range 14545 -> 16494
strand +

CDS

GTGAGAATTGAATTGACTGACTATAATTCAGATCCATCTACAACTATAAAGATTTATAGGCATTATTATCCATTTGACGTAGATAATTTGCCGCCCGTACTAGTTGAATTACCTGGTGATGCAAGTAGCTATACTGATGAGACTCTTATCCTCAATACCATGGTTTATTACAGGATATCAGTTGTACATAATGGCAATGAGGTAGTTGGTCCTTTGTACACCACAATGAAGCGGTACTACACTGGACCACAGATAAACAAAGATAGACCTGACCAGATTCTTCGTGGAGACAACTATATTGGTCGTTATGGAACCCTTCCCTTAGACACAGTGTTATCGCTGAATGTAGCGAAACAGCTAGTACCGTCATGTACAGTTATCGATGGGATCGTCCCTGAGACGATTGAGGTAGAGAAATGTAGTTATCACGGGAACGTGTTGTTCATTTCTACCGTCCCAGTTTTCCATGGTAGTCCAGAAGATCTATATAACGACGGAGCATTGTTGTCACATGGGGACGGTTCCGGTATTTTGAGTTCGGCGTTATATGATTCCATCGCAACTAAAGTCAACCAGGGTAAACCAATAACCTATAATAACTACTCATTCAAGTTTAGGCTGATGACGACTAGTGAGTATGCCGAACTCTATGTCAAGTTATATCCTGAATCACAAATGGGTCTAGCCTGTGAACGGGTTATCAGTAATTGTAACACGCATCCATTCAAATCACCGGTTGTTAATATCGGTTCTCAGGGTGAAACATTTAAGACTGTAGGTTTGGACGGCAGTTCTATAGATACTAACTGGACGACTAAAGGACCTTTATACATGGTCGTCGAGCTAATGAATCGCGGTGATATGGGCTGGCCTAATCCAGAGGTTAGTGTCACTCTTGCAGATCCGACTGATCGGATGATGTTTTGCCAATCAGAGATCGTCAATGGACGTGCCCACTTCTTTGGCGGTATCTATAGTAAGTTTAATAGTTACTCATCCGCCATTAATAAACATATTAGTGTGAATCTAGATGGAACAGATCGACAGGTACATGCCGATATGCCAGTTGGAGTGTATAACGCTTGCACCTGGGTACATGGTAATAAGATCTACTGTTTAGGTGGTGCTAAGAAGATAGGTAGTGGCGAATATACATATTCTGAACTGTATAATGACATTCAGGTATGGGAAGATAATGGTACCCAAGAAGGTATATGGACAACGATAACTAATAGTCTACCATTTTATTATGGCGCAAGCGTCACCACATACCAAGATATGAAATCAGATAAGAAACGTCTCTTGTATATTGGCGGGTATAACGATGTAGTACCATCTGGTAAAAATAACTTCGCTACGGCTGATTTGGATACATTCGATGGTACGTTCACCGTTTATGATAGGGCGACCTTCTATAGCGGTGGTGGTGGTGGACCTGTAACGCAATATGAAGATTATTTTCTTTGGGTCGGTCCAGAAACTAGAACAAATAACTATACGAATGCGACATTTAGTTTCACGATTCCCGAGAACGTAGACGACTTTATCTATACAAGTGGGATTAAACAACAAGGGACTGAATTACCCACAACCAAAGGTGGTAAGATACATGTTTGGCGTGATACGATCTTTATGTTCAGCGAGGCGTCGATTGATCAAAAGCAAGGTGAGTTATATCTATATCAATTCGTACCAAGCGAAAGCAGGTGGCTAAAAATAACTGTACCTATACCTGGATTAAGTGAAGATACCCGCGCATCTATCAGTGGTGCATTCCATGAAGGTAAGTTAGTCCTTATGTTAAATCAACCGTGGACTAATGCTTCATATGTTTCAAGTTTCTATTCCATTAGTCTAATTGATCCAATCGATGCTCCGATTGTTCCAGTAACTGATGTTGTAGTCGGTAATAGTCGAATATTCACAACATACGCCGAGGTTTCGATATGA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)