Protein

View in Explore
Genbank accession
AVH85344.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,79
TF
Evidence RBPdetect2
Probability 0,52
Protein sequence
MSNTLLLKRSAVPGKTPLLTDLQLGQLAINTYDGKLYTRKDNGTASIIDLGNITLSGDVTGSGSGSITLTLANSGVTAGTYKSVTVDAKGRVTAGTNPTTLAGYGITDGVNVSSLAAANGVATLDSFGKLLTSQIPASLVGAVVYQGVWNASTNSPTLTSGTGTKGNYYKVSVAGSTNIDGHSSWNIGDMIIFNGTTWDKIDGVESEVLSVFGRTGVVTMLSSDVTTALGYTPLSGNQNITLSGDATGSGATSITVTLADSGVTAGTYSSVTVDAKGRVTSGGQINSGTVTSALGYTPVQTVAGRTGNVVLTTSDVTGYGTVSDSVFSITNNSDPTKIAKFDASGISTGTTNTYTLPSVTGTLASLANISQTFTGTTTFSGTSVTVGSSTATATYGFGSGATVNGSTKTINIGTSGVSGSTTAITVGSTTSTTTIALNGAVTASTPTTADNSTLIATTAFVKNQGYAQSSALSASSGSSLVNFIASGSAAVSRTVQSVLRDTFNVRNYGAVGNGVTDDTAALNAMFAMIQSNATVVDVYFPAGNYIYSGSGLTGNAYVGRIRGDGPTASMITAASSAVTGSALTFTATADGLTLQDIGIFGPGQGAAGGQDGVVISNGGSPVRQPRFVNCEIYNWPGKALNVTTPIAGSAHNCRFQNNIHGVYLSGGTSFTFYNCYPNGNKKSGYWLNGTTYSTFNGCAADTNGIAYLLSGSTAITLVGCGNEAGTANNLTITNSSLTSNVATFTYSGPDQSADFIGNGRTVIIQGSTNIPAANAGISGLGDGRWPIASVGTNTISINLTSANISSAADTGTASFWAGDGVVINGSTIIQIQGYRTIAPAQTSSSMLVTEGSANQVTVTGMRSTQGSGSLQLVDMWLGNGTANIIRMNNAFTGGTYSAANNISTVSNGTWTLPTVTGVNALNSNGNLSLTTTASATSGTNNNSPTAFLIGTYWTGTASSQDVVAIQSKPATGANPLISLNFQHQSGSSGGMQLSVNGTPFLSGNSQFIGTSINTSGNATIGGTLSVTGVATAPTAAPGTNTTQIATTAFVQTATSSYLPLAGGTVTGAITLNAAPVVNGTAGWTTVSWNKGMRLSPSTAIEFAGPSSNHFGIGNSGGTLYFFTNTADDNSAAPNYFMTANSSGTVTYNAPVNGTFFNVSVSGAVAAAGTTQGTATALTSSVNVVTSGTGGVVLPAATGGMELVVINTTGSAINVYPASGGQIDSLGANVAFSLGAGAKLCYVATSTTQWYSLTAVYA
Physico‐chemical
properties
protein length:1257 AA
molecular weight: 125569,91670 Da
isoelectric point:5,45151
aromaticity:0,07001
hydropathy:0,10867

Domains

View on InterPro
Domain architecture
AVH85344.1
1 1257 aa
ENZ 503–720 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
AVH85344.1
1 1257 aa
Domain Start End Length (AA) Confidence
N-terminal 1 370 370 0,8868
Central domain 371 922 553 0,8524
C-terminal 923 1257 334 0,8277
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Ralstonia phage RsoM2USA [NCBI] · taxon 2070027
No lineage information
Host
Ralstonia solanacearum [NCBI] · taxon 305
cellular organisms Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales

Coding sequence (CDS)

Genbank protein accession
AVH85344.1 [NCBI]
Genbank nucleotide accession
MG752970.1 [NCBI]
CDS location
range 285114 -> 288887
strand +
CDS
ATGTCAAATACACTTCTCCTTAAGCGCTCAGCGGTTCCAGGAAAGACGCCGCTATTAACGGATTTGCAGCTAGGTCAGCTTGCTATTAACACATATGATGGCAAGCTGTATACTAGAAAAGATAATGGAACGGCATCAATTATAGATCTTGGAAACATAACTTTGTCCGGTGATGTCACTGGATCTGGATCTGGTTCAATAACATTAACGTTAGCAAACTCTGGTGTTACGGCTGGAACTTATAAATCGGTAACCGTCGATGCTAAAGGACGAGTGACGGCTGGAACTAATCCCACCACTCTTGCTGGTTATGGAATAACTGATGGCGTAAACGTTTCATCGTTGGCTGCAGCAAATGGTGTTGCTACTTTAGATTCTTTTGGAAAGCTGTTGACATCACAAATTCCTGCTTCTCTTGTTGGAGCGGTTGTTTATCAAGGGGTGTGGAATGCATCTACTAACTCTCCAACATTGACATCTGGTACTGGAACAAAGGGTAATTATTATAAAGTATCAGTAGCAGGTTCAACAAACATAGATGGCCATTCAAGTTGGAATATTGGAGATATGATTATCTTCAATGGAACGACATGGGATAAAATTGATGGAGTAGAATCTGAGGTTCTATCAGTTTTTGGTAGAACCGGTGTGGTAACGATGCTATCATCTGACGTTACCACCGCACTTGGTTATACACCACTTAGTGGAAACCAAAATATCACATTGTCAGGTGATGCTACTGGATCTGGGGCAACTTCTATCACTGTAACTCTAGCTGATTCAGGAGTAACGGCCGGAACATACTCATCAGTTACTGTTGATGCTAAAGGTAGAGTGACATCGGGTGGACAAATAAATTCAGGCACTGTTACGTCGGCTCTTGGATACACGCCTGTTCAGACAGTTGCGGGAAGAACAGGAAACGTAGTACTAACGACTAGCGATGTTACCGGTTACGGTACTGTGAGTGACTCGGTATTTTCGATTACCAACAATTCCGATCCTACAAAAATTGCGAAATTTGATGCAAGCGGTATTTCAACAGGAACAACGAACACTTATACGCTTCCATCGGTTACTGGTACTCTAGCAAGTCTCGCGAATATTTCGCAAACATTTACAGGCACCACAACATTTTCGGGTACATCCGTTACTGTGGGAAGTTCGACTGCAACCGCGACGTATGGCTTTGGATCTGGTGCTACGGTAAACGGATCTACAAAGACTATTAACATTGGTACGTCTGGTGTTTCAGGTTCTACTACTGCTATAACTGTCGGTTCAACTACGTCCACGACGACAATTGCCCTTAATGGTGCGGTAACTGCATCAACACCAACTACCGCGGATAACAGTACGCTTATAGCTACCACCGCTTTTGTTAAAAATCAGGGATATGCGCAATCATCCGCATTAAGTGCTTCGTCTGGTTCTTCACTCGTTAATTTTATCGCATCTGGATCTGCTGCAGTATCAAGAACTGTTCAATCCGTTTTGCGTGATACATTCAACGTTCGCAATTATGGTGCTGTTGGTAATGGGGTTACAGATGACACTGCTGCCCTTAATGCCATGTTTGCGATGATTCAGTCTAATGCAACTGTCGTAGACGTTTATTTCCCGGCCGGAAACTACATTTATTCAGGAAGTGGATTAACCGGTAATGCATATGTTGGAAGAATCCGTGGTGATGGTCCAACAGCATCTATGATTACTGCAGCATCAAGCGCGGTTACGGGTTCTGCACTTACATTCACTGCAACTGCCGATGGACTAACACTGCAGGATATAGGTATTTTTGGTCCGGGTCAAGGTGCTGCTGGTGGTCAAGACGGCGTGGTTATATCGAACGGTGGATCACCTGTTCGTCAGCCAAGATTTGTAAATTGCGAAATTTACAATTGGCCAGGAAAAGCATTGAATGTTACAACACCAATAGCCGGTTCTGCACATAATTGCCGCTTCCAGAATAACATTCATGGCGTATATTTGAGTGGTGGAACAAGCTTTACATTCTATAACTGCTATCCTAATGGTAATAAGAAGTCGGGATACTGGTTGAATGGTACCACATATAGCACCTTCAACGGCTGCGCGGCAGATACCAATGGTATTGCATACTTACTGTCTGGATCAACTGCTATCACCCTTGTAGGATGTGGTAATGAAGCGGGTACTGCTAATAATTTGACCATTACGAACAGTTCGCTTACGTCCAACGTTGCAACATTCACATACTCCGGTCCTGATCAATCGGCTGATTTTATAGGTAATGGTAGAACCGTGATTATTCAGGGTTCAACAAACATCCCAGCTGCCAACGCGGGTATATCTGGTCTTGGTGATGGTCGCTGGCCTATAGCATCTGTTGGTACAAATACAATTAGTATTAACTTGACAAGTGCAAACATTTCTTCAGCTGCTGATACGGGTACGGCTAGCTTCTGGGCTGGAGATGGTGTCGTTATAAACGGATCTACGATTATTCAAATTCAGGGTTACAGAACAATAGCTCCAGCACAGACAAGCAGCTCTATGCTGGTGACTGAAGGTTCTGCTAACCAGGTTACCGTGACTGGTATGCGTAGCACACAGGGAAGTGGATCTCTGCAGCTTGTTGATATGTGGTTGGGTAACGGCACTGCGAACATTATACGGATGAATAACGCATTCACCGGCGGTACTTATTCGGCTGCAAACAATATTTCGACGGTGTCAAACGGAACATGGACGCTTCCTACTGTTACAGGCGTAAATGCTTTAAACTCTAACGGAAACCTTTCTCTTACGACGACTGCTTCGGCCACATCAGGTACCAATAATAACAGTCCAACTGCTTTTCTGATTGGCACATACTGGACAGGCACCGCATCATCGCAAGATGTGGTTGCTATTCAGTCAAAGCCTGCTACCGGTGCAAATCCTTTAATTTCATTGAACTTCCAGCATCAATCTGGATCTTCAGGTGGTATGCAATTGTCGGTTAATGGAACTCCATTCTTGTCTGGAAACAGTCAGTTTATTGGTACTAGCATTAACACGTCGGGTAATGCTACTATTGGTGGCACATTGAGTGTGACTGGTGTTGCAACGGCCCCTACAGCAGCACCAGGAACTAACACCACACAAATTGCTACAACGGCATTTGTGCAAACCGCGACATCTTCATATCTGCCGCTTGCTGGTGGAACGGTTACTGGTGCTATTACGTTGAACGCGGCTCCGGTTGTAAATGGAACAGCGGGATGGACGACTGTAAGCTGGAATAAGGGAATGAGACTATCTCCATCCACTGCTATTGAATTTGCGGGTCCTTCTAGCAACCACTTTGGTATAGGTAACTCTGGCGGTACGCTGTATTTCTTCACAAACACTGCCGATGATAACTCAGCAGCTCCTAACTATTTCATGACTGCCAATAGTTCAGGAACCGTGACGTACAATGCACCGGTTAATGGTACGTTCTTTAACGTATCTGTTTCGGGTGCGGTTGCAGCAGCAGGTACTACGCAAGGAACGGCTACAGCGCTAACTTCATCGGTTAATGTGGTTACATCAGGAACAGGTGGAGTAGTTCTTCCAGCTGCAACAGGAGGAATGGAGTTGGTGGTTATCAATACTACAGGTTCTGCTATTAACGTATATCCAGCTTCAGGCGGTCAAATTGACTCGTTGGGAGCTAATGTAGCATTCTCGTTGGGAGCGGGAGCTAAATTGTGCTATGTTGCTACATCTACTACCCAATGGTATTCATTGACTGCAGTGTATGCATGA

Genome Context

Tertiary structure

AVH85344.1
ESMFold structure
Source ESMFold
pLDDT 59.6
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Complete genome of RsoM2USA, the largest bacteriophage infecting plant pathogenic bacterium Ralstonia solanacearum Ahmad,A.A., Addy,H.S. and Huang,Q. 2021-09-27 — GenBank