Phage RBP Database

Genbank accession

WAX24428.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect

Probability 0,89

TF

Evidence RBPdetect2

Probability 0,97

Protein sequence

MTGVFSWSQTASNNANADPSVNWAEGMAPSAVNDSARAMMASTAKWRDDISGAIVTSGTSTLYSVSSNQGFTSLAAMNGQIVAFTPHVTNAASPQINVDGLGAVFLRGSSGTNLGAGVLLAGTPYTAVYNSVNGEFTIHGFFGNPYNVPVGAGMLYFGLTAPNSSFAFPVGQAISRTTYITLFGVMGTTYGAGDGSTTFNLPDLTGRVPVMRDPGGIRISGLTFNSTDLGGSGGQQAIALSTANLPPYTPAGSVPSVSVSSTAQFTNNTGNVSVSAGGNPIPIPGGNSTVISNGSGTFSGTAQGGTSTPFSTVQPSVICNYAMRII

Physico‐chemical properties

protein length:	326 AA
molecular weight:	32879,12440 Da
isoelectric point:	5,47714
aromaticity:	0,08589
hydropathy:	0,11166

Domain architecture

WAX24428.1

1 326 aa

ATT 144–209 · STR 210–325 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR037053
ATT

IPR037053

SSF88874
STR

SSF88874

IPR011083
ATT

IPR011083

WAX24428.1

1326 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1413
STR

DC_1413

WAX24428.1

1326 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR037053	ATT	IPR037053	144	204	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
SSF88874	STR	SSF88874	146	325	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR011083	ATT	DC_0235	156	209	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits

Proteins with similar domain architecture

Phage

Bradyrhizobium phage ppBeUSDA76-2 [NCBI] · taxon 3003364

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Bradyrhizobium elkanii USDA 76 [NCBI] · taxon 398525

Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium elkanii USDA 76

Genbank protein accession

WAX24428.1 [NCBI]

Genbank nucleotide accession

OP596614.1 [NCBI]

CDS location

range 34991 -> 35971
strand +

CDS

ATGACTGGAGTTTTCAGTTGGTCGCAAACCGCGTCCAACAACGCTAATGCTGACCCTTCAGTTAACTGGGCTGAGGGGATGGCCCCCTCGGCCGTGAACGACAGTGCGCGCGCCATGATGGCTTCCACCGCAAAATGGCGGGACGACATTTCAGGCGCAATCGTCACGTCGGGGACCAGCACCCTCTATTCGGTCTCATCCAACCAAGGCTTTACGTCCTTGGCGGCGATGAATGGTCAAATCGTCGCCTTTACTCCGCATGTCACGAACGCAGCCAGCCCGCAAATAAACGTTGACGGCCTAGGGGCTGTATTCTTGCGAGGATCGTCAGGGACAAATCTTGGTGCTGGTGTTCTTCTCGCCGGCACTCCTTATACCGCCGTCTATAACAGCGTGAACGGCGAATTCACGATCCACGGCTTCTTCGGTAATCCGTACAATGTGCCCGTAGGAGCAGGGATGCTGTACTTTGGCCTTACGGCGCCGAATAGCTCGTTCGCGTTTCCTGTGGGCCAGGCGATTTCCCGGACTACCTACATCACCTTGTTTGGCGTGATGGGCACGACCTATGGAGCGGGGGATGGCAGCACGACGTTCAATCTTCCGGATCTGACAGGCCGTGTCCCTGTCATGCGAGATCCAGGCGGCATTCGCATTAGCGGCTTGACCTTCAACTCGACTGATCTTGGAGGAAGCGGCGGTCAACAGGCGATCGCGCTGAGCACCGCAAATCTGCCGCCGTATACGCCAGCTGGTTCCGTGCCGTCTGTGTCAGTTTCATCGACCGCTCAATTCACCAACAATACCGGTAATGTGAGCGTTTCCGCGGGCGGCAATCCGATCCCGATTCCTGGGGGCAATTCTACCGTTATCTCAAATGGCAGTGGCACGTTCTCCGGCACCGCGCAGGGGGGTACGAGCACACCGTTTAGCACGGTGCAGCCAAGCGTCATTTGCAACTACGCGATGAGGATCATCTGA

Title	Authors	Date	PMID	Source
Spontaneously produced lysogenic phages are an important component of the soybean Bradyrhizobium mobilome	Joglekar,P., Ferrell,B.D., Jarvis,T., Haramoto,K., Place,N., Dums,J.T., Polson,S.W., Wommack,K.E. and Fuhrmann,J.J.	—	—	GenBank

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature