Phage RBP Database

Genbank accession

AIX40653.1 [GenBank]

Protein name

hypothetical protein

RBP type

TSP

Evidence RBPdetect

Probability 0,89

Protein sequence

MPQSNTTAVLDNGVLTVTTDQRPEPALYGTPLGSGNFPNNPNTVDGQDGSFAFAIRAGTNTEDPHPTTLGPQGIALNGVVLFSPSNGAGALPGQTVLPAEGFSWNTVFNESTFGVDACGGHARQNGEYHYHSGSFLVNCWGNDVIQSNVYYSSSQHKGNFFRHPDGHSKIIGFCFDGYPIYGPFGYESVEDRTTGTKKLRSSFRILTTPADGRGYSYSQYTAGSFIQDYEYVNGLGDLDEFNGRYCQTPEYPDGTYAYFLSLDEQNNPVYPYIFGPTTKEQRTWPEEGSEDGYGGANASLSDSDILRITKTWSEATFNYDSVVSIPAEPPEGSPPLPSRLPVTILLHDDGGNGSNTVNKWRSVLPGDILVAPTGYISKWNIVDENKAPDMNYLIQLIRNLREYPNVAPDQFRIVGTSNGGALALRAFLELNDVGLTTVVAELSSLHINQWRNGVWYAPQTNEDTASANDSYGYTRAITPPTGRKIMTIANTNDTIIPYDGGVGGVPNTIFYGAQFSAQILAESQGYTGDQLGDAQGVQYNSTYPDIYLYKYFNNSVVHVKSNTGHNTNAGHETLIRQYIESGGTSAG

Physico‐chemical properties

protein length:	587 AA
molecular weight:	63810,09140 Da
isoelectric point:	4,70146
aromaticity:	0,11584
hydropathy:	-0,47019

Domain architecture

AIX40653.1

1 587 aa

STR 60–275 · RBD 318–579 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR025924
STR

IPR025924 IPR029058

IPR025924
STR

IPR025924 IPR029058

IPR029058
RBD

IPR029058

AIX40653.1

1587 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1006
ATT

DC_1006 DC_1015

AIX40653.1

1587 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR025924	STR	DC_0819	60	263	InterPro cluster	YHYH domain	Central	Low	Positional only	112 proteins / 112 hits
IPR025924	STR	DC_0819	60	275	InterPro cluster	YHYH domain	Central	Low	Positional only	112 proteins / 112 hits
IPR029058	RBD	IPR029058	318	530	Merged direct domain	Alpha/Beta hydrolase fold	C-terminal	Low	Positional only	12 proteins / 12 hits
IPR029058	RBD	IPR029058	335	579	Merged direct domain	Alpha/Beta hydrolase fold	C-terminal	Low	Positional only	12 proteins / 12 hits
IPR029058	RBD	IPR029058	340	579	Merged direct domain	Alpha/Beta hydrolase fold	C-terminal	Low	Positional only	12 proteins / 12 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

AIX40653.1

1 587 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	300	300	0,5112
Central domain	301	561	262	0,7957
C-terminal	562	587	25	0,3254

Note: Constraints were applied during segmentation.
Fixed 97 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Synechococcus phage ACG-2014d [NCBI] · taxon 1493509

Uroviricota Caudoviricetes Pantevenvirales Lowelvirus Lowelvirus tuscon4d

Host

Synechococcus sp. WH 7803 [NCBI] · taxon 32051

Bacteria Cyanobacteria Oscillatoriophycideae Chroococcales Synechococcus

Genbank protein accession

AIX40653.1 [NCBI]

Genbank nucleotide accession

KJ019140 [NCBI]

CDS location

range 65780 -> 67543
strand +

CDS

ATGCCGCAATCAAATACCACAGCAGTATTAGACAACGGGGTGCTGACAGTTACTACTGATCAGCGTCCCGAACCTGCTTTGTATGGAACCCCCTTAGGATCTGGTAATTTTCCAAATAATCCAAATACTGTAGATGGCCAAGATGGGTCATTTGCGTTTGCTATTAGGGCAGGAACTAATACAGAAGATCCACATCCAACTACTTTGGGACCTCAAGGTATAGCATTGAATGGGGTAGTTCTATTCAGTCCATCAAATGGTGCTGGAGCTTTACCTGGACAAACTGTTCTTCCTGCTGAAGGTTTTTCGTGGAACACTGTGTTTAACGAAAGTACATTTGGAGTTGATGCATGTGGTGGGCATGCTAGACAAAATGGAGAGTATCACTACCACTCTGGTAGTTTTCTTGTAAATTGTTGGGGTAATGATGTAATCCAATCCAACGTATACTATAGTTCATCTCAACATAAGGGAAACTTCTTTAGGCATCCAGATGGACATTCAAAAATTATAGGATTCTGTTTTGATGGATATCCAATCTATGGTCCTTTTGGATATGAAAGCGTTGAGGATAGGACTACTGGTACAAAAAAATTAAGGTCATCTTTTAGAATTTTAACGACTCCTGCTGATGGTAGAGGATATAGTTATTCTCAGTATACTGCAGGAAGTTTTATTCAAGACTATGAATATGTAAATGGTCTTGGAGATTTGGATGAATTCAATGGTAGATATTGCCAGACACCAGAATATCCAGACGGAACATATGCTTACTTCTTGTCGTTAGACGAACAAAATAATCCAGTGTATCCATACATCTTTGGACCTACAACTAAGGAACAGAGAACGTGGCCAGAAGAAGGTTCTGAAGATGGTTATGGTGGAGCAAATGCATCTCTCAGTGATTCTGATATTCTTAGAATTACTAAAACTTGGTCAGAAGCAACTTTCAATTATGATTCTGTAGTTAGTATACCAGCAGAACCCCCTGAAGGATCACCACCACTCCCTTCACGATTGCCTGTAACCATTCTGTTACATGATGATGGTGGAAATGGTAGTAACACTGTAAATAAGTGGAGGAGCGTTCTTCCTGGAGACATTCTAGTAGCACCTACTGGTTATATCAGTAAGTGGAATATTGTGGATGAGAATAAAGCTCCTGATATGAACTACCTAATTCAACTAATTAGAAACTTGAGAGAGTATCCTAACGTTGCTCCAGATCAATTTAGAATTGTGGGTACATCAAATGGTGGAGCTTTGGCACTCAGAGCATTCTTGGAATTAAATGATGTTGGTCTCACTACAGTAGTTGCTGAATTATCTTCTCTACATATCAATCAATGGAGAAATGGTGTTTGGTATGCACCACAAACCAATGAGGATACTGCATCTGCAAATGATTCCTATGGATATACTAGAGCAATAACTCCCCCAACGGGGAGAAAAATTATGACTATTGCAAATACTAACGATACTATTATTCCATATGACGGTGGAGTTGGTGGTGTTCCAAATACTATATTCTACGGAGCGCAATTTAGTGCTCAGATTCTTGCTGAATCTCAAGGTTATACTGGAGATCAACTGGGAGATGCTCAGGGTGTGCAATATAACTCAACTTATCCCGACATATACCTCTACAAATACTTTAATAATTCGGTAGTTCATGTCAAGAGTAATACTGGACATAACACTAATGCTGGTCATGAAACTCTGATTCGTCAGTACATTGAAAGCGGCGGAACATCCGCTGGTTAA

Title	Authors	Date	PMID	Source
Ecological redundancy of diverse viral populations within a natural community	Gregory,A.C., LaButti,K., Copeland,A., Woyke,T. and Sullivan,M.B.	2015-03-20	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature